G1815488


Basic Information

Item Value
gene id G1815488
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 45592185 ~ 45595699 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2076981
ccatatttacaacacattactgagtaccactctccatatttacaacacattactgagtatcactctccatatttacaacacattactgagtaccactctccatatttacaacacattactgagtatcactctccatatttacaacacattactgagtatcactctccatatttacaacatattactgagtaccactctccatatttacaacacattactgagtaccactctccatatttacaacacattactgagtatcactctccatatttacaacacattactgagtatcactctccatattgacaaACcgagtggtggctgcatcatgttatggacaCCGAGCGTGCCGATCTCGTCGTAATCGTATCCGTTTTATCAAACCTGATACTGGTAATTGGATTTACTGGTGATGGGAAAACTCAGAagtgtgcttt
>TU2076982
actgagtaccactctccatatttacaacacattactgagtatcgctctccatatttacaacacattactgagtaccactctccatatttacaatacaacacattactgagtatcactctccatatttacaacacattactgagtatcactctccatatttacaacacattactgagtatcactctccatatttacaacacattactgagtaccactctccatatttacaacacattactgagtaccactctccatatttacaacacattactgagtatcgctctccatatttacaacacattactgagtatcgctctccatatttacaacacattacagaatATCGCTCTCCATATTGACAAACcgagtggtggctgcatcatgttatggacaCCGAGCGTGCCGATCTCGTCGTAATCGTATCCGTTTTATCAAACCTGATACTGGTAATTGGATTTACTGGTGATGGGAAAACTCAGAagtgtgcttt

Function

NR:

description
NLR family CARD domain-containing protein 3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2076981 False 437 lncRNA 0.38 2 45592185 45595699
TU2076982 True 490 lncRNA 0.38 2 45592185 45593793

Neighbor

gene id symbol gene type direction distance location
LOC110501943 NA coding downstream 4473 45582551 ~ 45587712 (-)
LOC110501933 LOC106582484 coding downstream 13279 45550854 ~ 45578906 (-)
LOC110501935 gdf3 coding downstream 48195 45533097 ~ 45543990 (-)
LOC118943614 gdf3 coding downstream 71353 45519847 ~ 45520832 (-)
LOC110501936 LOC106572616 coding downstream 133557 45457226 ~ 45458628 (-)
LOC110501932 LOC106582487 coding upstream 107254 45702953 ~ 45726394 (-)
LOC118943596 NA coding upstream 415416 46011115 ~ 46028506 (-)
ints6 LOC106582497 coding upstream 523689 46119388 ~ 46156972 (-)
spopla spopl coding upstream 1274132 46869775 ~ 46974132 (-)
LOC110501995 hnmt coding upstream 1446526 47042225 ~ 47061327 (-)
G1815482 NA non-coding downstream 6698 45584967 ~ 45585487 (-)
G1815475 NA non-coding downstream 15297 45576523 ~ 45576888 (-)
G1815466 NA non-coding downstream 43314 45548385 ~ 45548871 (-)
G1815463 NA non-coding downstream 45766 45546133 ~ 45546419 (-)
G1815516 NA non-coding upstream 44516 45640215 ~ 45643396 (-)
G1815523 NA non-coding upstream 60858 45656557 ~ 45657002 (-)
G1815544 NA non-coding upstream 100393 45696092 ~ 45697548 (-)
G1815562 NA non-coding upstream 165487 45761186 ~ 45761462 (-)
G1815572 NA non-coding upstream 173790 45769489 ~ 45769719 (-)
G1814480 NA other downstream 918297 44673447 ~ 44673888 (-)
LOC110502171 LOC106582464 other downstream 1038765 44473683 ~ 44553607 (-)
G1812404 NA other downstream 2914425 42677257 ~ 42677760 (-)
LOC110502155 psd12 other downstream 2987165 42603998 ~ 42605768 (-)
G1812079 LOC106582433 other downstream 3202912 42386822 ~ 42389273 (-)
G1815615 LOC106582489 other upstream 243051 45838750 ~ 45840982 (-)
G1816841 NA other upstream 1629852 47225551 ~ 47226646 (-)
G1816929 NA other upstream 1805423 47400985 ~ 47402047 (-)
G1817287 LOC106582526 other upstream 1875595 47471294 ~ 47473384 (-)
LOC110501953 ihh other upstream 2466350 48057851 ~ 48064453 (-)

Expression


Co-expression Network