XLOC_037521


Basic Information

Item Value
gene id XLOC_037521
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 243961 ~ 248985 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00074951
tgatcgttcggtcgtgtgttctattgttccagctcaacaaacgtcggctctgcgtcggttaacgaccagaggccgacgaagcacttcataagcacttgatctctcatgcccatgaaagaatccggcaacatatttggtttacaaACTTtaatgtgcgcgcgcgcgtcttgcttccaacactggagcggagaggatgttgctatgggaaacgaagctacaacacgacacgacaccacctaaaagacacaacacgacttctctcaagctgccgttttgactgttttcaggagtgagagaataacctcctgctacagaaaatataacacaagattcctaaatttctgaagggagctgatcacagagatacaggaaagacaggaggtctaagtttaacctaagtgccgtgttgctgatgaacatctttatattattggatgcctgattgcagttcaactccaaactcagttggaccagctgatcagtgtcttcagtattaccacaagctactgggcagatgtgtggacagctatgagccaaacttgggacgtttggtttttagcAGGTGTGACCGTCTGGgcagcagaaacaagacaactaatcatagtcctcctgatcattctgttctcctggttgtgaggatgtgcagaggctgtatttgtcagtgttaaaagacttgtgcagctgtatccagacatacaagcagccgacaaagagttctggagcaggacagacagggcagcacggtggcgcagagggtagcacgttcgcctcatagcaagaaggttgctgcttcaagcttcggctgggtc
>TCONS_00074952
gacttctctcaagctgccgttttgactgttttcaggagtgagagaataacctcctgctacagaaaatataacacaagattcctaaatttctgaagggagctgatcacagagatacaggaaagacaggaggtctaagtttaacctaagtgccgtgttgctgatgaacatctttatatgcaaaaccggagcacccagagaaaacccaccaaacgcagagagaatttgcaaactacacacagaaatgcctgctgATCCAGCTGCGGCTCGAGTCAGcatccttgctgtaaggcgacagcactacctattgtgccaccacgtcacgctcttattaaattatatttatataatgttgtGTTTCAGCACATGCTATTTTGGgaagacaaaatatattcataagctctcagaaaattcaataagagaattcattcattcattttaagagaattaactgcacaattacttgaaatgtgtgggattacattatttgttaacccaaagtgagtttctctttctttgcagtattggatgcctgattgcagttcaactccaaactcagttggaccagctgatcagtgtcttcagtattaccacaagctactgggcagatgtgtggacagctatgagccaaacttgggacgtttggtttttagcAGGTGTGACCGTCTGGgcagcagaaacaagacaactaatcatatttagatacaatcaaatgtccaaaccatctctgactgaatgacatcaaggaaacaggatcaaaaagatcattcattatagaatgtttcatagttggttatatttttcaggtcctcctgatcattctgttctcctggttgtgaggatgtgcagaggctgtatttgtcagtgttaaaagacttgtgcagctgtat
>TCONS_00074953
catcaactgaaaaggaggtctaagtttaacctaagtgccgtgttgctgatgaacatctttatatgcaaaaccggagcacccagagaaaacccaccaaacgcagagagaatttgcaaactacacacagaaatgcctgctgATCCAGCTGCGGCTCGAGTCAGcatccttgctgtaaggcgacagcactacctattgtgccaccacgtcacgctcttattaaattatatttatataatgttgtGTTTCAGCACATGCTATTTTGGgaagacaaaatatattcataagctctcagaaaattcaataagagaattcattcattcattttaagagaattaactgcacaattacttgaaatgtgtgggattacattatttgttaacccaaagtgagtttctctttctttgcagtattggatgcctgattgcagttcaactccaaactcagttggaccagctgatcagtgtcttcagtattaccacaagctactgggcagatgtgtggacagctatgagccaaacttgggacgtttggtttttaggtaataccagtgacaaagtattcagtaaattgcttataataaaagatgctcactgcttacccccttatagttaagttgtttgcagtttcattgttgtaaaaataccatact
>TCONS_00074954
gttgctatgggaaacgaagctacaacacgacacgacaccacctaaaagacacaacacgacttctctcaagctgccgttttgactgttttcaggagtgagagaataacctcctgctacagaaaatataacacaagattcctaaatttctgaagggagctgatcacagagatacaggaaagacaggaggtctaagtttaacctaagtgccgtgttgctgatgaacatctttatatgtaagtatatttttgacatactgccagacacttgtcaaacagtgatgagcaaacgaatggccgttcttttaaaaagatcagggagatgcaagtctggagattaatatacattttaattcaaaattgatttatctgaaatatttcataatgttttgagatatgtgccctatatgcatttagatgtccatgcatgtttaaaatacttttaaatttaacaatggctgcaagttataaaaacataaacaaacacaaaaatgttaaagtaaattgagaaaacattttcatcagtttgacaacaggtagatcagctcctgacagacatgttaacagatcagtttaactcttattaaattcattcattcattcattcattcattcattttcttttctgcttagtccctttattaatctggggtaaccacagcggaatgaactgtcaacttatccagcatatgttttacgcagtggatgcccttccagctgcaagccatcactgggaaacaaccatatacgcttgttctcactcatacactacagacaatttagcctacccaattcacctgtaccccatgtctttggacttgtaggcaaaaccggagcacccagagaaaacccaccaaacgcagagagaatttgcaaactac

Function

GO:

id name namespace
GO:0044085 cellular component biogenesis biological_process
GO:0022607 cellular component assembly biological_process
GO:0001732 formation of cytoplasmic translation initiation complex biological_process
GO:0071826 ribonucleoprotein complex subunit organization biological_process
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0022618 ribonucleoprotein complex assembly biological_process
GO:0065003 protein-containing complex assembly biological_process
GO:0071840 cellular component organization or biogenesis biological_process
GO:0043604 amide biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:0006412 translation biological_process
GO:0006413 translational initiation biological_process
GO:0043933 protein-containing complex subunit organization biological_process
GO:0006457 protein folding biological_process
GO:0010467 gene expression biological_process
GO:0010499 proteasomal ubiquitin-independent protein catabolic process biological_process
GO:0050767 regulation of neurogenesis biological_process
GO:0006518 peptide metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0034622 cellular protein-containing complex assembly biological_process
GO:0002181 cytoplasmic translation biological_process
GO:0002183 cytoplasmic translational initiation biological_process
GO:0051960 regulation of nervous system development biological_process
GO:0071013 catalytic step 2 spliceosome cellular_component
GO:0044424 obsolete intracellular part cellular_component
GO:1990904 ribonucleoprotein complex cellular_component
GO:0005839 proteasome core complex cellular_component
GO:0005852 eukaryotic translation initiation factor 3 complex cellular_component
GO:1905368 peptidase complex cellular_component
GO:1905369 endopeptidase complex cellular_component
GO:0032991 protein-containing complex cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0033290 eukaryotic 48S preinitiation complex cellular_component
GO:0000502 proteasome complex cellular_component
GO:0016282 eukaryotic 43S preinitiation complex cellular_component
GO:0005685 U1 snRNP cellular_component
GO:0070993 translation preinitiation complex cellular_component
GO:0008135 translation factor activity, RNA binding molecular_function
GO:0070003 threonine-type peptidase activity molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0004298 threonine-type endopeptidase activity molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:0003723 RNA binding molecular_function
GO:0003743 translation initiation factor activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko05169 Epstein-Barr virus infection
ko05016 Huntington disease
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00074951 False 809 lncRNA 0.48 8 243961 248985
TCONS_00074952 False 887 lncRNA 0.40 7 245302 248188
TCONS_00074953 False 649 lncRNA 0.39 2 245765 247000
TCONS_00074954 True 877 lncRNA 0.38 3 246293 248245

Neighbor

gene id symbol gene type direction distance location
XLOC_037519 NA coding downstream 27434 204557 ~ 216527 (-)
XLOC_037518 CABZ01067557.1 coding downstream 41156 190438 ~ 202805 (-)
XLOC_037517 PLBD2 coding downstream 63627 168442 ~ 180334 (-)
XLOC_037516 FQ377903.1 coding downstream 108187 134489 ~ 135774 (-)
XLOC_037515 SLC5A7 coding downstream 115925 123593 ~ 128036 (-)
XLOC_037522 pcbp2 coding upstream 1739 250724 ~ 264173 (-)
XLOC_037523 kif5aa coding upstream 17003 265988 ~ 306515 (-)
XLOC_037524 ndufa4l2a coding upstream 74475 323460 ~ 327901 (-)
XLOC_037525 zgc:158320 coding upstream 105883 354868 ~ 356501 (-)
XLOC_037526 si:dkey-11f4.7 coding upstream 111267 360252 ~ 362971 (-)
XLOC_037532 CR753874.2 non-coding upstream 158693 407678 ~ 414488 (-)
XLOC_037533 NA non-coding upstream 185390 434375 ~ 437803 (-)
XLOC_037541 NA non-coding upstream 508608 757593 ~ 758416 (-)
XLOC_037542 NA non-coding upstream 523878 772863 ~ 773656 (-)
XLOC_037546 NA non-coding upstream 631763 880748 ~ 889567 (-)

Expression


Co-expression Network