XLOC_037573


Basic Information

Item Value
gene id XLOC_037573
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 2180519 ~ 2207258 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00074958
aagaggaTTAGAAGAAGGAAAAGACAGAGGAACTGACAGAGTCTTTTGTATCTGTCCCTCATTCTCCTCTTACCGCCGGATAATTCTCCCATCCGCCGAAGGGAAACAAAGCAACACTTAAAGGGGCGCAGAGTGTGCGGGGGTGTCAGGTTGTCAGTAATCTGACAGCTATGGTAACTACCCTGTAATCCGGCGGCCTGGAGCCCGGCTCTGGTCCTGACACCCGGCCCGGTG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00074958 True 234 lncRNA 0.54 2 2180519 2207258

Neighbor

gene id symbol gene type direction distance location
XLOC_037572 NA coding downstream 7322 2150922 ~ 2173197 (-)
XLOC_037571 hoxd13a coding downstream 190196 1986816 ~ 1990323 (-)
XLOC_037570 hoxd12a coding downstream 194505 1981882 ~ 1986014 (-)
XLOC_037569 hoxd11a coding downstream 202429 1975818 ~ 1978090 (-)
XLOC_037568 hoxd10a coding downstream 210448 1967707 ~ 1970071 (-)
XLOC_037574 BX255915.1 coding upstream 19205 2226463 ~ 2277636 (-)
XLOC_037575 CU639436.1 coding upstream 123603 2330861 ~ 2337303 (-)
XLOC_037576 NA coding upstream 175083 2382341 ~ 2389808 (-)
XLOC_037577 NA coding upstream 346616 2553874 ~ 2557307 (-)
XLOC_037578 scrn3 coding upstream 352961 2560219 ~ 2573121 (-)
XLOC_037566 dre-mir-10b-1 non-coding downstream 224596 1952956 ~ 1955923 (-)
XLOC_037564 NA non-coding downstream 244350 1931428 ~ 1936169 (-)
XLOC_037558 NA non-coding downstream 400138 1463769 ~ 1780381 (-)
XLOC_037580 NA non-coding upstream 570088 2777346 ~ 2780823 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G511840 NA non-coding CI01000353 null 167724 ~ 167982 (+)
rainbow trout (Oncorhynchus mykiss) G517400 NA non-coding NC_048570.1 CM023224.2 49939878 ~ 49940117 (-)