XLOC_037572


Basic Information

Item Value
gene id XLOC_037572
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 2150922 ~ 2173197 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00075277
gcttttcccGATCTCAAtcaatttctctcacgagtgccattcgcgcctgctgttctcacgttaatccaccagaagccgctgtcgactgactaaatGAACGACCTACCAGTACCCCCACCAACCCCTGTCCATAAACTCAACCAACAGTGTTtctaaaagcaatccagaaaaatagtTTTACAACGTTTTTAGACTTACCACATTCTCTccctgttatttgtttgttttatattttggcttttgattttgtcttacctgctttcaggAATCATTCTTCGCCGGACTCAAACACTGTCATCAAGggcaactcctctctgcgtctcaaatccttTGATGTACACGACGAGCCCCTGGACAAACCGATAACAACAGGAAAGACGTCGgaatggagAAAGACAACAAGGTCTCCCTAAAGGCATCCACAACAAAAATAGCATGTATCTGTTCAGGGAGCTGGAGAGCTGGAAAATGCAGTGAACAACAGAGAAGGAAAGATGGGAGAGGCGCTTTATCAAAAACAGCCATTCATCAGGAGCCGGGGCAGACAGCTCTCATCTGACCTCTGCTGCAATAATACGGCATCAACTAGGCCAACTACCCAGTTTAGCGGCGGAGCAGAGAGCAGCGACCGAAGGGAAGATTAAGTGCACTGCTTCAGCTCGGCGCTCCCCCGGGCTCCTCTGCCTGATGTTGTATTGATTGCAAAAGTTTACCAGTAAGTATCACAAACAACAATAGCCAGGTCAACGTTCACTGAGGCCTGAATGCTTATTCCCCGGTGGGAGGAGAGCCGGCGGAGATCTCTCTGGGCTAAAAGCTGAGCCATCATGGGGTTGAGATCGGGGGGCTGGACCGTGCACCGGACCACTCCTCCTGACATTTAGGGAAAAAGCGATATGTCAACGCGAGGAGAGCAAAGAGAGAGATAATTATAAGCCTTTGCATTATAAAAGGCTCCATCGACAAACTGTCCTCCGCATCTGCCATGCAGCGCCAGGGCCTGTTAGGAGCTCTCAGTACCCCTCTATCCATCTAATTACTCCTCTATCTTTTTCTGCCTCTCCTATATTTATAGTtgaagtcttttttttctttttcaaatatttcccaaattatt
>TCONS_00075278
ctAATTAAAAGCACCGGAGACTCTATTATTTGTATAAATCTCCTTTTCGTCCCTCATTCTGCGAGTTTCACCCGAGGCTCTGACCTCCTTCGGCCAAATTAACAACAGCAGCCAGCCAAACTTCTTCTTTTCGCAAACTTTGATGCTTTCCCGcctgatttttcttttatttcttccGTGAGGAGATTATAATGGCGCGTGGAGCACGGCGGATGAGTGTGAAAAGCTGATTTCCTCTTGAGTGCTTTAAGAACACAGTAAATCCCTTCAgAATCATTCTTCGCCGGACTCAAACACTGTCATCAAGggcaactcctctctgcgtctcaaatccttTGATGTACACGACGAGCCCCTGGACAAACCGATAACAACAGGAAAGACGTCGgaatggagAAAGACAACAAGGTCTCCCTAAAGGCATCCACAACAAAAATAGCATGTATCTGTTCAGGGAGCTGGAGAGCTGGAAAATGCAGTGAACAACAGAGAAGGAAAGATGGGAGAGGCGCTTTATCAAAAACAGCCATTCATCAGGAGCCGGGGCAGACAGCTCTCATCTGACCTCTGCTGCAATAATACGGCATCAACTAGGCCAACTACCCAGTTTAGCGGCGGAGCAGAGAGCAGCGACCGAAGGGAAGATTAAGTGCACTGCTTCAGCTCGGCGCTCCCCCGGGCTCCTCTGCCTGATGTTGTATTGATTGCAAAAGTTTACCAGTAAGTATCACAAACAACAATAGCCAGGTCAACGTTCACTGAGGCCTGAATGCTTATTCCCCGGTGGGAGGAGAGCCGGCGGAGATCTCTCTGGGCTAAAAGCTGAGCCATCATGGGGTTGAGATCGGGGGGCTGGACCGTGCACCGGACCACTCCTCCTGACATTTAGGGAAAAAGCGATATGTCAACGCGAGGAGAGCAAAGAGAGAGATAATTATAAGCCTTTGCATTATAAAAGGCTCCATCGACAAACTGTCCTCCGCATCTGCCATGCAGCGCCAGGGCCTGTTAGGAGCTCTCAGTACCCCTCTATCCATCTAATTACTCCTCTATCTTTTTCTGCCTCTCCTATATTTATAGTtgaagtcttttttttctttttcaaatatttcccaaattatt

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00075277 False 1117 lncRNA 0.47 3 2150922 2171296
TCONS_00075278 True 1122 lncRNA 0.47 4 2150922 2173197

Neighbor

gene id symbol gene type direction distance location
XLOC_037571 hoxd13a coding downstream 160599 1986816 ~ 1990323 (-)
XLOC_037570 hoxd12a coding downstream 164908 1981882 ~ 1986014 (-)
XLOC_037569 hoxd11a coding downstream 172832 1975818 ~ 1978090 (-)
XLOC_037568 hoxd10a coding downstream 180851 1967707 ~ 1970071 (-)
XLOC_037567 hoxd9a coding downstream 185195 1964005 ~ 1965727 (-)
XLOC_037573 NA coding upstream 7322 2180519 ~ 2207258 (-)
XLOC_037574 BX255915.1 coding upstream 53266 2226463 ~ 2277636 (-)
XLOC_037575 CU639436.1 coding upstream 157664 2330861 ~ 2337303 (-)
XLOC_037576 NA coding upstream 209144 2382341 ~ 2389808 (-)
XLOC_037577 NA coding upstream 380677 2553874 ~ 2557307 (-)
XLOC_037566 dre-mir-10b-1 non-coding downstream 194999 1952956 ~ 1955923 (-)
XLOC_037564 NA non-coding downstream 214753 1931428 ~ 1936169 (-)
XLOC_037558 NA non-coding downstream 370541 1463769 ~ 1780381 (-)
XLOC_037563 CR848724.1 non-coding downstream 401886 1748919 ~ 1749036 (-)
XLOC_037561 CU104777.1 non-coding downstream 501178 1642605 ~ 1649744 (-)

Expression


Co-expression Network