RNA id: TCONS_00075277


Basic Information

Item Value
RNA id TCONS_00075277
length 1117
lncRNA type inter_gene
GC content 0.47
exon number 3
gene id XLOC_037572
representative False

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 2150922 ~ 2173197 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

gcttttcccGATCTCAAtcaatttctctcacgagtgccattcgcgcctgctgttctcacgttaatccaccagaagccgctgtcgactgactaaatGAACGACCTACCAGTACCCCCACCAACCCCTGTCCATAAACTCAACCAACAGTGTTtctaaaagcaatccagaaaaatagtTTTACAACGTTTTTAGACTTACCACATTCTCTccctgttatttgtttgttttatattttggcttttgattttgtcttacctgctttcaggAATCATTCTTCGCCGGACTCAAACACTGTCATCAAGggcaactcctctctgcgtctcaaatccttTGATGTACACGACGAGCCCCTGGACAAACCGATAACAACAGGAAAGACGTCGgaatggagAAAGACAACAAGGTCTCCCTAAAGGCATCCACAACAAAAATAGCATGTATCTGTTCAGGGAGCTGGAGAGCTGGAAAATGCAGTGAACAACAGAGAAGGAAAGATGGGAGAGGCGCTTTATCAAAAACAGCCATTCATCAGGAGCCGGGGCAGACAGCTCTCATCTGACCTCTGCTGCAATAATACGGCATCAACTAGGCCAACTACCCAGTTTAGCGGCGGAGCAGAGAGCAGCGACCGAAGGGAAGATTAAGTGCACTGCTTCAGCTCGGCGCTCCCCCGGGCTCCTCTGCCTGATGTTGTATTGATTGCAAAAGTTTACCAGTAAGTATCACAAACAACAATAGCCAGGTCAACGTTCACTGAGGCCTGAATGCTTATTCCCCGGTGGGAGGAGAGCCGGCGGAGATCTCTCTGGGCTAAAAGCTGAGCCATCATGGGGTTGAGATCGGGGGGCTGGACCGTGCACCGGACCACTCCTCCTGACATTTAGGGAAAAAGCGATATGTCAACGCGAGGAGAGCAAAGAGAGAGATAATTATAAGCCTTTGCATTATAAAAGGCTCCATCGACAAACTGTCCTCCGCATCTGCCATGCAGCGCCAGGGCCTGTTAGGAGCTCTCAGTACCCCTCTATCCATCTAATTACTCCTCTATCTTTTTCTGCCTCTCCTATATTTATAGTtgaagtcttttttttctttttcaaatatttcccaaattatt

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00075276 lncRNA downstream 214753 1931428 ~ 1936169 (-) False XLOC_037564
TCONS_00075275 lncRNA downstream 214753 1931428 ~ 1936169 (-) False XLOC_037564
TCONS_00075274 lncRNA downstream 215075 1931428 ~ 1935847 (-) False XLOC_037564
TCONS_00075273 lncRNA downstream 217050 1931428 ~ 1933872 (-) False XLOC_037564
TCONS_00075261 lncRNA downstream 370541 1463769 ~ 1780381 (-) False XLOC_037558
TCONS_00074958 lncRNA upstream 9223 2180519 ~ 2207258 (-) True XLOC_037573
TCONS_00075279 lncRNA upstream 64597 2235893 ~ 2277636 (-) True XLOC_037574
TCONS_00074959 lncRNA upstream 211045 2382341 ~ 2389808 (-) True XLOC_037576
TCONS_00075280 lncRNA upstream 382578 2553874 ~ 2557307 (-) True XLOC_037577
TCONS_00073813 lncRNA upstream 397048 2568344 ~ 2572791 (-) True XLOC_037578
TCONS_00073807 mRNA downstream 160599 1986816 ~ 1990323 (-) True XLOC_037571
TCONS_00073806 mRNA downstream 164908 1981882 ~ 1986014 (-) True XLOC_037570
TCONS_00073805 mRNA downstream 166318 1981882 ~ 1984604 (-) False XLOC_037570
TCONS_00073804 mRNA downstream 172832 1975818 ~ 1978090 (-) True XLOC_037569
TCONS_00073803 mRNA downstream 180851 1967707 ~ 1970071 (-) True XLOC_037568
TCONS_00073810 mRNA upstream 388923 2560219 ~ 2573121 (-) False XLOC_037578
TCONS_00073811 mRNA upstream 389244 2560540 ~ 2572831 (-) False XLOC_037578
TCONS_00073812 mRNA upstream 395887 2567183 ~ 2572790 (-) False XLOC_037578
TCONS_00073814 mRNA upstream 420672 2591968 ~ 2594410 (-) False XLOC_037579
TCONS_00073815 mRNA upstream 421096 2592392 ~ 2594464 (-) True XLOC_037579
TCONS_00073798 other downstream 191370 1938985 ~ 1959552 (-) False XLOC_037565
TCONS_00073801 other downstream 194999 1953021 ~ 1955923 (-) True XLOC_037566
TCONS_00073800 other downstream 197889 1952956 ~ 1953033 (-) False XLOC_037566
TCONS_00073794 other downstream 216836 1931440 ~ 1934086 (-) True XLOC_037564
TCONS_00073793 other downstream 401886 1748919 ~ 1749036 (-) True XLOC_037563
TCONS_00073808 other upstream 55167 2226463 ~ 2277492 (-) False XLOC_037574
TCONS_00073809 other upstream 159565 2330861 ~ 2337303 (-) True XLOC_037575
TCONS_00073827 other upstream 1319535 3490831 ~ 3496579 (-) True XLOC_037591
TCONS_00073830 other upstream 1337022 3508318 ~ 3519711 (-) True XLOC_037592
TCONS_00073841 other upstream 2272622 4443918 ~ 4447104 (-) True XLOC_037598

Expression Profile

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