RNA id: TCONS_00073814


Basic Information

Item Value
RNA id TCONS_00073814
length 2443
RNA type mRNA
GC content 0.48
exon number 1
gene id XLOC_037579
representative False

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 2591968 ~ 2594464 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTAGCTGTCTAGGAAAGGCCCTGGATATGGCTACGTCTATACTTGGGGTAAGTGCGCAAATTCTGATATATTTTAATTCgacgttttttattattattattcttttatcgttgttgttgttagcATGTCACTATTGCTTGCTCGCATTCAAACCTCCAAGTAACTTTTAGATGCATTccttaaaacaaatgttttccatTCAAGAAAACGCTCTTGTTTTTTATGAAGAAAAGGGAGTTTTTTTAGAATTATAAAAAAACTTCGATAAAATATGAATAATCTGTGAAATAACGTTAATTTGTACTGCAGAAAGGTCACTTCTtggttaaaaatacaataataacaaagcaCTAAAATTAAGTATGTGTTAGCAATTATTAAATGGCTACCATAATGAATATGTACAATTATTTTCTAAAGCTTTTTAGACAActctttaataaaaatgaatctgCGCATTGAGCGCTTTATTCGATGTTTGGGTTTTATTTGGGGGAGTCATTGACACTTGTAAAACTATTTGATTCTCACACAAGCCAGCTATGTTTTATAGTCTAGTAAAGAGCACAAACTTTTCATCCACACAGGAAGAGCCGCGGTTTGGAACTACCCCTTTAGCGATGCTGGCTGCGACCTGCAACAAAATTGGCAACACCAGTCCCCTCACGACTCTCCCCGACTCCAGTGCGTTCTCCAAAGGCGGATTTCACCCCTGGAAAAGATCCTCGTCGAGCTGCAATTTGGGCTCCAGCCTGCCTGGATTCACAGTCGCCACAAGCCGAAGCACCTCCGGACTAACGACCACCACCGGCGCGGGCAACAGCGCGTTCTGCCTGGCCTCGACCTCTCCGACCTCCTCGGCTTTCTCCGCCGAATACAGCAGCTTGTTCTCCAACACAACCAGCGTTTCGTCGCAGGACTCGGGACAGTCTGCGTTCATTTCCAAAGTTCACTCTTCTGCAGACACTTTATACCCGCGCGTCGGCATGGCGCACCCGTACGAATCCTGGTACAAGTCCGGCTTTCACTCCACTATTTCGGGCGATGTGGCCAACGGGGCGTCCACGTGGTGGGACGTGCACACAAACCCGGGCTCGTGGCTCGAAGTGCAAAATCCAGCTGGCACTTTGCAAAGTTCGTTGCACTCCGGGACCCCCCAAGCCATCCACTCCCAGCTAAGCGGCTACAACCCGGACTTCTCCAGCCTCACGCACTCCGCGTTTAGCTCCACTGGCATCAGCCCCACCGCGTCTCACCTCCTGTCCACTAGTCAACACCTGTTGACACAGGAGGGGTTCAAAACTGTGATTCCCACATACACGGACGCGTCAGCCACGAATGCCATGATATCGGGCGCCAGCTCTGGCATCGGGACTTCATCCAGATCCTCCAGGAGATACTCCGGGCGGGCCACATGCGACTGCCCGAACTGCCAAGAGGCGGAGCGGCTTGGGCCTGCAGGCGCCAGCCTGCGGAGAAAAGGACTTCATAGCTGTCACATCCCGGGCTGCGGGAAAGTCTACGGGAAAACATCTCACCTCAAAGCGCACCTGAGGTGGCACACCGGTGAGAGGCCCTTTGTGTGCAACTGGCTTTTTTGCGGTAAAAGATTCACCAGATCCGACGAGCTCCAGAGGCACCTGCGCACCCACACCGGGGAGAAGAGGTTTGCGTGCCCGGTGTGCAACAAGCGCTTCATGAGGAGCGACCACTTGAGCAAACACATCAAAACACACACCGCTGGAGGCGGAGGCAAAAAGGGAAGCGACAGCGACACCGACACCAGCAACCTGGAGACCCCCAGGTCCGAGTCGCCCGAACTGATTTTGGAGGGTGTAAACCCACGGGTCACGGTCAAAGATCAGTCTCCGCACCACGAGTCCTGAGCGCGATTTTACGACAATGACCTCAAAGCGTTTGTTTCTCTCTCCCCCCTCTCTCCAAGGTGAATCAAGAAAAGGAAACGGGTCTGGAGTATGTGACATTTCTTGAGACTTTTGCATTGGAAAGAGTGAATTCAGTGCAACACTGGCTATAATTCTGCTCCGCACAGACAAACACCTCACTTTTCAGGACGATTCAAAGTCTCGGAAAGGCTCGGTATTTTAATAAGAGTGGACATTCGGTGTGGAATCAGTGCGCGGTAGAGGAACTAAATAGCCTAGCTTTGGCTGAGCTAACTGTGTACATATATCCACAAAaatatcatgttatttttttccctccTGTAAATGTTACTTATGACTGTTTTGTGGTGGATCCTGAAATTCAGGGAATTTTCTTTCCTTTCGACGCACTTTGTGGATGTCAGTATGTATGTTACACAGctatttaaaattcatttaacCTTTCCTTTACCtggctaaaaaaatatataaatgtttaattgtaTAAAGTCACGCTTATAAGGCTTTCATTTTGTAATTAAAGGGATTTAAAATCT

Function

GO:

id name namespace
GO:0045743 positive regulation of fibroblast growth factor receptor signaling pathway biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0035118 embryonic pectoral fin morphogenesis biological_process
GO:0030326 embryonic limb morphogenesis biological_process
GO:0005634 nucleus cellular_component
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function

KEGG:

id description
ko03000 Transcription factors

ZFIN:

id description
ZDB-GENE-040426-2313 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Involved in embryonic limb morphogenesis. Acts upstream of or within embryonic pectoral fin morphogenesis and positive regulation of fibroblast growth factor receptor signaling pathway. Predicted to be located in nucleus. Is expressed in several structures, including median fin fold; neural tube; pectoral fin bud; presumptive median fin fold; and tail bud. Orthologous to human SP9 (Sp9 transcription factor).

Ensembl:

ensembl_id ENSDART00000188306

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00073813 lncRNA downstream 19177 2568344 ~ 2572791 (-) True XLOC_037578
TCONS_00075280 lncRNA downstream 34661 2553874 ~ 2557307 (-) True XLOC_037577
TCONS_00074959 lncRNA downstream 202160 2382341 ~ 2389808 (-) True XLOC_037576
TCONS_00075279 lncRNA downstream 314332 2235893 ~ 2277636 (-) True XLOC_037574
TCONS_00074958 lncRNA downstream 384710 2180519 ~ 2207258 (-) True XLOC_037573
TCONS_00075282 lncRNA upstream 182936 2777346 ~ 2780823 (-) False XLOC_037580
TCONS_00075281 lncRNA upstream 182936 2777346 ~ 2780823 (-) True XLOC_037580
TCONS_00073816 lncRNA upstream 266811 2861221 ~ 2866407 (-) False XLOC_037581
TCONS_00074960 lncRNA upstream 266811 2861221 ~ 2866454 (-) True XLOC_037581
TCONS_00075283 lncRNA upstream 536278 3130688 ~ 3132168 (-) True XLOC_037585
TCONS_00073810 mRNA downstream 18847 2560219 ~ 2573121 (-) False XLOC_037578
TCONS_00073811 mRNA downstream 19137 2560540 ~ 2572831 (-) False XLOC_037578
TCONS_00073812 mRNA downstream 19178 2567183 ~ 2572790 (-) False XLOC_037578
TCONS_00073807 mRNA downstream 601645 1986816 ~ 1990323 (-) True XLOC_037571
TCONS_00073806 mRNA downstream 605954 1981882 ~ 1986014 (-) True XLOC_037570
TCONS_00073817 mRNA upstream 285353 2879763 ~ 2892250 (-) False XLOC_037582
TCONS_00073818 mRNA upstream 290886 2885296 ~ 2892045 (-) True XLOC_037582
TCONS_00073819 mRNA upstream 301599 2896009 ~ 2945008 (-) False XLOC_037583
TCONS_00073820 mRNA upstream 302493 2896903 ~ 2936017 (-) True XLOC_037583
TCONS_00073821 mRNA upstream 354862 2949272 ~ 3034125 (-) False XLOC_037584
TCONS_00073809 other downstream 254665 2330861 ~ 2337303 (-) True XLOC_037575
TCONS_00073808 other downstream 314476 2226463 ~ 2277492 (-) False XLOC_037574
TCONS_00073798 other downstream 632416 1938985 ~ 1959552 (-) False XLOC_037565
TCONS_00073827 other upstream 896421 3490831 ~ 3496579 (-) True XLOC_037591
TCONS_00073830 other upstream 913908 3508318 ~ 3519711 (-) True XLOC_037592
TCONS_00073841 other upstream 1849508 4443918 ~ 4447104 (-) True XLOC_037598
TCONS_00073868 other upstream 3814747 6409157 ~ 6409271 (-) True XLOC_037613
TCONS_00073875 other upstream 4123267 6717677 ~ 6717801 (-) True XLOC_037618

Expression Profile

//