RNA id: TCONS_00073816


Basic Information

Item Value
RNA id TCONS_00073816
length 477
lncRNA type inter_gene
GC content 0.43
exon number 2
gene id XLOC_037581
representative False

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 2861221 ~ 2866454 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGGGGAGCTCTGATACAGGACACATTCTGAAATGCAGATACAAAAACAAACTCGCCGAGAGAGCTGCTGGACTGTGGTGGACATTTAAACCCTCATATTAAAGTCTGAAATGTgctGAATCTGGACGTTCTGCAGGaggagagatagatagagagagagagagagcgagcgggGGAAATGGACGGGTTTTATGGAGCTGATCCGGAACAGAGAGTCTCTCGGCTGTGATGTGGAGCCACTCGTAAGCTTCATTAGTTTTTAGCTCATTAATCTGCTCTCTCATAACCTGTAACACACAATTCAGCTCAGTTCATTACACCACTCGGCTCACGCCAGAGGCCTTCATTCATATAAACATCACATTTGAGGAGGATTGTGGGAAAACAAACAAGGAAATGGCAAATCCtcttcatttcttttattttgttgacTGAATATTTATTGGACTTTTGAATAAACATAACAGAATtgcacaaa

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00075282 lncRNA downstream 80398 2777346 ~ 2780823 (-) False XLOC_037580
TCONS_00075281 lncRNA downstream 80398 2777346 ~ 2780823 (-) True XLOC_037580
TCONS_00073813 lncRNA downstream 288430 2568344 ~ 2572791 (-) True XLOC_037578
TCONS_00075280 lncRNA downstream 303914 2553874 ~ 2557307 (-) True XLOC_037577
TCONS_00074959 lncRNA downstream 471413 2382341 ~ 2389808 (-) True XLOC_037576
TCONS_00075283 lncRNA upstream 264281 3130688 ~ 3132168 (-) True XLOC_037585
TCONS_00073824 lncRNA upstream 287319 3153726 ~ 3154286 (-) True XLOC_037587
TCONS_00075284 lncRNA upstream 399161 3265568 ~ 3280451 (-) True XLOC_037588
TCONS_00075285 lncRNA upstream 491990 3358397 ~ 3395521 (-) False XLOC_037589
TCONS_00075286 lncRNA upstream 508228 3374635 ~ 3395254 (-) False XLOC_037589
TCONS_00073815 mRNA downstream 266757 2592392 ~ 2594464 (-) True XLOC_037579
TCONS_00073814 mRNA downstream 266811 2591968 ~ 2594410 (-) False XLOC_037579
TCONS_00073810 mRNA downstream 288100 2560219 ~ 2573121 (-) False XLOC_037578
TCONS_00073817 mRNA upstream 13356 2879763 ~ 2892250 (-) False XLOC_037582
TCONS_00073818 mRNA upstream 18889 2885296 ~ 2892045 (-) True XLOC_037582
TCONS_00073819 mRNA upstream 29602 2896009 ~ 2945008 (-) False XLOC_037583
TCONS_00073820 mRNA upstream 30496 2896903 ~ 2936017 (-) True XLOC_037583
TCONS_00073821 mRNA upstream 82865 2949272 ~ 3034125 (-) False XLOC_037584
TCONS_00073809 other downstream 523918 2330861 ~ 2337303 (-) True XLOC_037575
TCONS_00073808 other downstream 583729 2226463 ~ 2277492 (-) False XLOC_037574
TCONS_00073798 other downstream 901669 1938985 ~ 1959552 (-) False XLOC_037565
TCONS_00073827 other upstream 624424 3490831 ~ 3496579 (-) True XLOC_037591
TCONS_00073830 other upstream 641911 3508318 ~ 3519711 (-) True XLOC_037592
TCONS_00073841 other upstream 1577511 4443918 ~ 4447104 (-) True XLOC_037598
TCONS_00073868 other upstream 3542750 6409157 ~ 6409271 (-) True XLOC_037613
TCONS_00073875 other upstream 3851270 6717677 ~ 6717801 (-) True XLOC_037618

Expression Profile

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