Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00073798 |
| length | 480 |
| RNA type | processed_transcript |
| GC content | 0.45 |
| exon number | 3 |
| gene id | XLOC_037565 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007120.7 |
| NCBI id | CM002893.2 |
| chromosome length | 56459846 |
| location | 1937049 ~ 1959917 (-) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0006355 | regulation of transcription, DNA-templated | biological_process |
| GO:0007275 | multicellular organism development | biological_process |
| GO:0009952 | anterior/posterior pattern specification | biological_process |
| GO:0045944 | positive regulation of transcription by RNA polymerase II | biological_process |
| GO:0048704 | embryonic skeletal system morphogenesis | biological_process |
| GO:0005634 | nucleus | cellular_component |
| GO:0043565 | sequence-specific DNA binding | molecular_function |
| GO:0003677 | DNA binding | molecular_function |
| GO:0003700 | DNA-binding transcription factor activity | molecular_function |
| GO:0000978 | RNA polymerase II cis-regulatory region sequence-specific DNA binding | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-990415-120 | Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in anterior/posterior pattern specification; embryonic skeletal system morphogenesis; and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be active in nucleus. Is expressed in several structures, including hindbrain; hindbrain neural keel; neural tube; pectoral fin bud; and spinal cord. Orthologous to human HOXD3 (homeobox D3). |
| ensembl_id | ENSDART00000138730 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00075276 | lncRNA | downstream | 2816 | 1931428 ~ 1936169 (-) | False | XLOC_037564 |
| TCONS_00075275 | lncRNA | downstream | 2816 | 1931428 ~ 1936169 (-) | False | XLOC_037564 |
| TCONS_00075274 | lncRNA | downstream | 3138 | 1931428 ~ 1935847 (-) | False | XLOC_037564 |
| TCONS_00075273 | lncRNA | downstream | 5113 | 1931428 ~ 1933872 (-) | False | XLOC_037564 |
| TCONS_00075261 | lncRNA | downstream | 158604 | 1463769 ~ 1780381 (-) | False | XLOC_037558 |
| TCONS_00075277 | lncRNA | upstream | 191370 | 2150922 ~ 2171296 (-) | False | XLOC_037572 |
| TCONS_00075278 | lncRNA | upstream | 191370 | 2150922 ~ 2173197 (-) | True | XLOC_037572 |
| TCONS_00074958 | lncRNA | upstream | 220967 | 2180519 ~ 2207258 (-) | True | XLOC_037573 |
| TCONS_00075279 | lncRNA | upstream | 276341 | 2235893 ~ 2277636 (-) | True | XLOC_037574 |
| TCONS_00074959 | lncRNA | upstream | 422789 | 2382341 ~ 2389808 (-) | True | XLOC_037576 |
| TCONS_00073789 | mRNA | downstream | 235184 | 1692926 ~ 1703801 (-) | False | XLOC_037562 |
| TCONS_00073790 | mRNA | downstream | 235184 | 1693369 ~ 1703801 (-) | False | XLOC_037562 |
| TCONS_00073792 | mRNA | downstream | 235224 | 1695321 ~ 1703761 (-) | True | XLOC_037562 |
| TCONS_00073791 | mRNA | downstream | 236337 | 1693535 ~ 1702648 (-) | False | XLOC_037562 |
| TCONS_00073786 | mRNA | downstream | 299020 | 1629307 ~ 1639965 (-) | True | XLOC_037560 |
| TCONS_00073802 | mRNA | upstream | 4453 | 1964005 ~ 1965727 (-) | True | XLOC_037567 |
| TCONS_00073803 | mRNA | upstream | 8155 | 1967707 ~ 1970071 (-) | True | XLOC_037568 |
| TCONS_00073804 | mRNA | upstream | 16266 | 1975818 ~ 1978090 (-) | True | XLOC_037569 |
| TCONS_00073805 | mRNA | upstream | 22330 | 1981882 ~ 1984604 (-) | False | XLOC_037570 |
| TCONS_00073806 | mRNA | upstream | 22330 | 1981882 ~ 1986014 (-) | True | XLOC_037570 |
| TCONS_00073794 | other | downstream | 4899 | 1931440 ~ 1934086 (-) | True | XLOC_037564 |
| TCONS_00073793 | other | downstream | 189949 | 1748919 ~ 1749036 (-) | True | XLOC_037563 |
| TCONS_00073788 | other | downstream | 294224 | 1644683 ~ 1644761 (-) | True | XLOC_037561 |
| TCONS_00073777 | other | downstream | 559495 | 1379376 ~ 1379490 (-) | True | XLOC_037555 |
| TCONS_00073774 | other | downstream | 935430 | 1003441 ~ 1003555 (-) | True | XLOC_037549 |
| TCONS_00073808 | other | upstream | 266911 | 2226463 ~ 2277492 (-) | False | XLOC_037574 |
| TCONS_00073809 | other | upstream | 371309 | 2330861 ~ 2337303 (-) | True | XLOC_037575 |
| TCONS_00073827 | other | upstream | 1531279 | 3490831 ~ 3496579 (-) | True | XLOC_037591 |
| TCONS_00073830 | other | upstream | 1548766 | 3508318 ~ 3519711 (-) | True | XLOC_037592 |
| TCONS_00073841 | other | upstream | 2484366 | 4443918 ~ 4447104 (-) | True | XLOC_037598 |
