RNA id: TCONS_00073786


Basic Information

Item Value
RNA id TCONS_00073786
length 346
RNA type mRNA
GC content 0.58
exon number 2
gene id XLOC_037560
representative True

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 1589672 ~ 1639965 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CATGCCGGGACGCGGTTGCTCATCTCCGCCTTCAGCCTCCATCAGCCGCCGCTGACCTCTGACAGCAAACACGGAAGCAGCATGGCGTCCAacggcagcagcagcagcagcagatcacAGCACAGGCTGAGGATCATCGCCGGACACTTGCAGAAGCGCACAGAAGATCAACACACCAGTCTCTCCGCGCAAAACTGCAGAGCCGAGTCTCCCGGATCCAGCCCGAGCCGCCAGACACCGGTGCCCAGGAGGAGgCAGGAAATCATGAAGTGGAACGGCTGGGGTTACAGCGACTCaagatttctgtttaataaaaaggGTCAAGCAGAGTTCACAGGCAAACGGT

Function

GO:

id name namespace
GO:0006629 lipid metabolic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0008610 lipid biosynthetic process biological_process
GO:0008611 ether lipid biosynthetic process biological_process
GO:0005777 peroxisome cellular_component
GO:0016740 transferase activity molecular_function
GO:0016491 oxidoreductase activity molecular_function
GO:0050660 flavin adenine dinucleotide binding molecular_function
GO:0071949 FAD binding molecular_function
GO:0008609 alkylglycerone-phosphate synthase activity molecular_function
GO:0003824 catalytic activity molecular_function

KEGG:

id description
ko00565 Ether lipid metabolism
ko04146 Peroxisome

ZFIN:

id description
ZDB-GENE-031118-14 Predicted to enable FAD binding activity; alkylglycerone-phosphate synthase activity; and oxidoreductase activity. Predicted to be involved in ether lipid biosynthetic process. Predicted to act upstream of or within lipid biosynthetic process. Predicted to be located in peroxisome. Human ortholog(s) of this gene implicated in rhizomelic chondrodysplasia punctata and rhizomelic chondrodysplasia punctata type 3. Orthologous to human AGPS (alkylglycerone phosphate synthase).

Ensembl:

ensembl_id ENSDART00000150947

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00075257 lncRNA downstream 323884 1302937 ~ 1305423 (-) True XLOC_037554
TCONS_00075256 lncRNA downstream 447853 1177901 ~ 1181454 (-) True XLOC_037551
TCONS_00075255 lncRNA downstream 600657 1027015 ~ 1028650 (-) True XLOC_037550
TCONS_00073771 lncRNA downstream 739740 880748 ~ 889567 (-) True XLOC_037546
TCONS_00075254 lncRNA downstream 855651 772863 ~ 773656 (-) True XLOC_037542
TCONS_00073787 lncRNA upstream 2640 1642605 ~ 1649744 (-) False XLOC_037561
TCONS_00075273 lncRNA upstream 291463 1931428 ~ 1933872 (-) False XLOC_037564
TCONS_00075274 lncRNA upstream 291463 1931428 ~ 1935847 (-) False XLOC_037564
TCONS_00075276 lncRNA upstream 291463 1931428 ~ 1936169 (-) False XLOC_037564
TCONS_00075275 lncRNA upstream 291463 1931428 ~ 1936169 (-) False XLOC_037564
TCONS_00073784 mRNA downstream 24706 1589672 ~ 1604601 (-) False XLOC_037560
TCONS_00073783 mRNA downstream 129586 1485234 ~ 1499721 (-) True XLOC_037559
TCONS_00073782 mRNA downstream 145105 1464861 ~ 1484202 (-) True XLOC_037557
TCONS_00073780 mRNA downstream 145428 1463052 ~ 1483879 (-) False XLOC_037557
TCONS_00073781 mRNA downstream 160224 1464794 ~ 1469083 (-) False XLOC_037557
TCONS_00073789 mRNA upstream 52961 1692926 ~ 1703801 (-) False XLOC_037562
TCONS_00073790 mRNA upstream 53404 1693369 ~ 1703801 (-) False XLOC_037562
TCONS_00073791 mRNA upstream 53570 1693535 ~ 1702648 (-) False XLOC_037562
TCONS_00073792 mRNA upstream 55356 1695321 ~ 1703761 (-) True XLOC_037562
TCONS_00073795 mRNA upstream 297084 1937049 ~ 1939232 (-) False XLOC_037565
TCONS_00073777 other downstream 249817 1379376 ~ 1379490 (-) True XLOC_037555
TCONS_00073774 other downstream 625752 1003441 ~ 1003555 (-) True XLOC_037549
TCONS_00073788 other upstream 4718 1644683 ~ 1644761 (-) True XLOC_037561
TCONS_00073793 other upstream 108954 1748919 ~ 1749036 (-) True XLOC_037563
TCONS_00073794 other upstream 291475 1931440 ~ 1934086 (-) True XLOC_037564
TCONS_00073798 other upstream 299020 1938985 ~ 1959552 (-) False XLOC_037565
TCONS_00073800 other upstream 312991 1952956 ~ 1953033 (-) False XLOC_037566

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000353_00602357_00602647.mRNA False 983 mRNA 0.48 1 CI01000353 602122 ~ 603104 (-)