XLOC_037557 (rbm45)


Basic Information

Item Value
gene id XLOC_037557
gene name rbm45
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 1463052 ~ 1484202 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00073780
GAGGAACGTTATTATTTCAAACGTGTCCGCGCTCACAGTTTACTGAAAATTCACTGTCATTTGGTTTTTAGAGCAATTTCGCCAAACGTCAGTATTTTAAAGCGGTGTTCGCTGGGTTATCACGTTAAGATAATAATTCTGATCTTTTAACCTTTACTATGGACGACTCTAACCGACCGTCTTCGTATCTGGACGAGCCTCCGAACAGTCGGCTGTTTCTGGTCACCAGTAAATCCATCACTGAGGACACCATCCGAGAAAGCTTCGCCTCTTTTGGCGAAATCCAGGATATATGGGTGGTAAAAGACAAGCAGACCAAAGAGTCCAAAGGAGTGGCGTTCATTAAATTCGCCAAATCCTCTCAAGCCTGCACCGCTATGGAGGAGATGCACGGCAGATGCCTGGCCGAGGGAACCAAACCTATAAAAGTGTTCATCGCTCAGTCCAGGTCTTCTGGAAGCCATCGAGATGTGGAGGATGAGGAGCTCACAAGAATATTTGTGATGATCCCGAAAACATTCACTGAGGATgatttaaaagaaacatttaaggtgTATGGAGATATAGAGTACGCTATCATTATACGAAATAAGACCACTGGTGACAGCAAAGGTCTGGGATACGTCAGATTCCACAAACCATCACAAGCTGCCAAAGCCGTTGAAAACTGTGATAAGACTTTCAGAGCTATTATAGCAGAGCCCAGAACCAAGAATTCCTCAGCAGACAACGACTATTTCAGCAACCCCAGGACGACGGAGCACTCCACCAGTGAACTAGGCTCCAGCTCATACGCATTTGCTCAGGAGTCCAGCAGCTACAGCGCAGCAGAGTCCTATAGCTCTGACATCATCACCCGCTGCCTGATGGTGTCCTCGCGGGTGTCCGTCTCACAGGAGCAGATCTACAGCCTGTTTGACCTCATCCCGGGCCTGGACTACTGCGAGATACAGAGAGATCAATACGGCTTCAGCAAAGGTCAGGTGGTGGTTCGGTATAGTAACCTGGGCTCTGCGGTGTATGCTAAAGAGAAGCTGAACGGGTTCGAGTATCCTCCTGGAAACCGACTCTCTGTATCTTTTGTGGATGATGGAGAGGACAGAACGAGTCCTGTGGGGAAGATGGCAATGCAGCTCGTGGCGGCTCAGATGATGTCTATGGTGTGGAACGGCCCTTCTGGTTCACAGCTAATGAAGACTAGTGCGGGCTACACAGCTCCCCCTGTGCCCCAGAAGGCACGCTTGCAGACAGACGCGAATCTCCCTGCTCCGAAGAAGCTGCTTGCGCTTGACAGTGTGGTGAAGGAGAGGCTGTTTGTCATCTTCAACCCCTCGCCTCTGCCGGTGGAAGTGCTGGAGGACGTCTTCTGTCGTTTCGGGTCCCTGATTGAGGTGTACTTGGTCCCAGGCCGGAATGTGGGGTATATAAAGTATGCCGACCGCAGAAGTGCACACGATGCCATAGATACCATGCACGGTAAAGTGGTTAACGGGGTCAAGATGAAGGTGATGCTGGCCGACCCACCCAAAGAAGAGTCACACAAGCGCCAGAGAACTTACTGACCTCTGACCTTATGACACACACAGAGGTTTAAGTGACATTGACGCATGACCTCGACATGACAGGACGAGTTTTTACGGTGACACGACGGACGCTGACTGCCGTATTGCCATTTCAGTTCTTTAATGAATAAGGAAAACTTTCTGCTTTCCTTTAGTTTTATGTTTACTGTTAGTCAACTACCAGTGTTGGAGACATTTTTACGGAGACTTCACCAAAACATATAGTGCTAAACCTGTatgccttttctttctttctttctttcttcttttagttttttgcctctttctttagttgttttgttt
>TCONS_00073781
GGTGGTTCGGTATAGTAACCTGGGCTCTGCGGTGTATGCTAAAGAGAAGCTGAACGGGTTCGAGTATCCTCCTGGAAACCGACTCTCTGTATCTTTTGTGGATGATGGAGAGGACAGAACGAGTCCTGTGGGGAAGATGGCAATGCAGCTCGTGGCGGCTCAGATGATGTCTATGGTGTGGAACGGCCCTTCTGGTTCACAGCTAATGAAGACTAGTGCGGGCTACACAGCTCCCCCTGTGCCCCAGAAGGCACGCTTGCAGACAGACGCGAATCTCCCTGCTCCGAAGAAGCTGCTTGCGCTTGACAGTGTGGTGAAGGAGAGGCTGTTTGTCATCTTCAACCCCTCGCCTCTGCCGGTGGAAGTGCTGGAGGACGTCTTCTGTCGTTTCGGGTCCCTGATTGAGGTGTACTTGGTCCCAGGCCGGAATGTGGGGTATATAAAGTATGCCGACCGCAGAAGTGCACACGATGCCATAGATACCATGCACGGTAAAGTGGTTAACGGGGTCAAGATGAAGGTGATGCTGGCCGACCCACCCAAAGAAGAGTCACACAAGCGCCAGAGAACTTACTGACCTCTGACCTTATGACACACACAGGTAAGTGCACTCTGTAGGTAAGAACCTGTGAGGTTATTCAGAGATGCGTGAATCTGCATGCGCTTTA
>TCONS_00073782
ATTCAAGTTCTACATGTGTTTGTTAAGATAAAAGTAGACTCATTAATAAATTTTTAgtaaacttattaaattaaaataatattaatacattagaGTGACACATAATAAACtacgttattttattattttattgttattattattattattatttagataatACTATATTAATACAATGCCACAAGAACAAGAGGTATTAGAAACTGAATTTAACTAGCTGacggagaaaaaaagacaaacaaagggAGTCTTTTATTATGAAATGTGTATCTGCGCTTGCTTTGTCGTCACGTGCTCTGTGAGATATATATATGGTCGAGATAGAGGAACGTTATTATTTCAAACGTGTCCGCGCTCACAGTTTACTGAAAATTCACTGTCATTTGGTTTTTAGAGCAATTTCGCCAAACGTCAGTATTTTAAAGCGGTGTTCGCTGGGTTATCACGTTAAGATAATAATTCTGATCTTTTAACCTTTACTATGGACGACTCTAACCGACCGTCTTCGTATCTGGACGAGCCTCCGAACAGTCGGCTGTTTCTGGTCACCAGTAAATCCATCACTGAGGACACCATCCGAGAAAGCTTCGCCTCTTTTGGCGAAATCCAGGATATATGGGTGGTAAAAGACAAGCAGACCAAAGAGTCCAAAGGAGTGGCGTTCATTAAATTCGCCAAATCCTCTCAAGCCTGCACCGCTATGGAGGAGATGCACGGCAGATGCCTGGCCGAGGGAACCAAACCTATAAAAGTGTTCATCGCTCAGTCCAGGTCTTCTGGAAGCCATCGAGATGTGGAGGATGAGGAGCTCACAAGAATATTTGTGATGATCCCGAAAACATTCACTGAGGATgatttaaaagaaacatttaaggtgTATGGAGATATAGAGTACGCTATCATTATACGAAATAAGACCACTGGTGACAGCAAAGGTCTGGGATACGTCAGATTCCACAAACCATCACAAGCTGCCAAAGCCGTTGAAAACTGTGATAAGACTTTCAGAGCTATTATAGCAGAGCCCAGAACCAAGAATTCCTCAGCAGACAACGACTATTTCAGCAACCCCAGGACGACGGAGCACTCCACCAGTGAACTAGGCTCCAGCTCATACGCATTTGCTCAGGAGTCCAGCAGCTACAGCGCAGCAGAGTCCTATAGCTCTGACATCATCACCCGCTGCCTGATGGTGTCCTCGCGGGTGTCCGTCTCACAGGAGCAGATCTACAGCCTGTTTGACCTCATCCCGGGCCTGGACTACTGCGAGATACAGAGAGATCAATACGGCTTCAGCAAAGGTCAGGTGGTGGTTCGGTATAGTAACCTGGGCTCTGCGGTGTATGCTAAAGAGAAGCTGAACGGGTTCGAGTATCCTCCTGGAAACCGACTCTCTGTATCTTTTGTGGATGATGGAGAGGACAGAACGAGTCCTGTGGGGAAGATGGCAATGCAGCTCGTGGCGGCTCAGATGATGTCTATGGTGTGGAACGGCCCTTCTGGTTCACAGCTAATGAAGACTAGTGCGGGCTACACAGCTCCCCCTGTGCCCCAGAAGGCACGCTTGCAGACAGACGCGAATCTCCCTGCTCCGAAGAAGCTGCTTGCGCTTGACAGTGTGGTGAAGGAGAGGCTGTTTGTCATCTTCAACCCCTCGCCTCTGCCGGTGGAAGTGCTGGAGGACGTCTTCTGTCGTTTCGGGTCCCTGATTGAGGTGTACTTGGTCCCAGGCCGGAATGTGGGGTATATAAAGTATGCCGACCGCAGAAGTGCACACGATGCCATAGATACCATGCACGGTAAAGTGGTTAACGGGGTCAAGATGAAGGTGATGCTGGCCGACCCACCCAAAGAAGAGTCACACAAGCGCCAGAGAACTTACTGACCTCTGACCTTATGACACACACAG

Function

symbol description
rbm45 Predicted to enable RNA binding activity. Orthologous to human RBM45 (RNA binding motif protein 45).

GO:

id name namespace
GO:0003676 nucleic acid binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
ko04990 Domain-containing proteins not elsewhere classified

ZFIN:

id description
ZDB-GENE-070122-4 Predicted to enable RNA binding activity. Orthologous to human RBM45 (RNA binding motif protein 45).

Ensembl:

ensembl_id ENSDARG00000063731

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00073780 False 1865 mRNA 0.48 10 1463052 1483879
TCONS_00073781 False 668 mRNA 0.53 4 1464794 1469083
TCONS_00073782 True 1909 mRNA 0.46 9 1464861 1484202

Neighbor

gene id symbol gene type direction distance location
XLOC_037556 osbpl6 coding downstream 3067 1391535 ~ 1459985 (-)
XLOC_037555 FP102120.4 coding downstream 83562 1379376 ~ 1379490 (-)
XLOC_037554 NA coding downstream 157629 1302937 ~ 1305423 (-)
XLOC_037553 gpr1 coding downstream 226204 1235778 ~ 1236848 (-)
XLOC_037552 ino80da coding downstream 262865 1187805 ~ 1200187 (-)
XLOC_037559 si:ch211-222f23.6 coding upstream 1032 1485234 ~ 1499721 (-)
XLOC_037560 agps coding upstream 105470 1589672 ~ 1639965 (-)
XLOC_037561 CU104777.1 coding upstream 158403 1642605 ~ 1649744 (-)
XLOC_037562 hnrnpa3 coding upstream 208724 1692926 ~ 1703801 (-)
XLOC_037563 CR848724.1 coding upstream 264717 1748919 ~ 1749036 (-)
XLOC_037551 NA non-coding downstream 281598 1177901 ~ 1181454 (-)
XLOC_037550 NA non-coding downstream 434402 1027015 ~ 1028650 (-)
XLOC_037549 CABZ01066922.1 non-coding downstream 459497 1003441 ~ 1003555 (-)
XLOC_037564 NA non-coding upstream 447226 1931428 ~ 1936169 (-)
XLOC_037566 dre-mir-10b-1 non-coding upstream 468754 1952956 ~ 1955923 (-)
XLOC_037572 NA non-coding upstream 666720 2150922 ~ 2173197 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000353_00779223_00786536 RBM45 coding CI01000353 null 779223 ~ 786655 (+)