XLOC_037556 (osbpl6)


Basic Information

Item Value
gene id XLOC_037556
gene name osbpl6
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 1391535 ~ 1459985 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00073778
ATGTCCCGCCATCAGAGCCGAACCACCAGCCTGGAGGAGAAAGTGGCCACGCCCATCCACAGAAGCACCGCCCCCTTGCAGAAAAGCTCCACCCCCACGCACAAGAGcgcctcctcctcctcgtcctcTCAGAGGGACAGTCGGCAGgaGCCGGACAGTTGGGAGATCATCGAGGGTCTGAGGATTGGACAGACTCATGTGCAGCGGCCCGAGAAGCACGAAGGCTTCATGCTGAAGAAGAGGAAGTGGCCTCTGAAGGGCTGGCACAAGCGTTTCTTCGTCCTGGATAACGGCATCCTGAAGTACTCCAAATCTCCAGTCGATattcaGAAAGGAAAGCTTCATGGCAGTATAGATGTGGGTCTGTCTGTGATGTCCATCAAGAAACGAGCTCGCCGCATCGACCTGGACACAGAGGAGCACATTTACCatctgaagGTGAAGTCTCCAGATGTGTTTGACCTCTGGGTGTGTAAGCTGCGTCACCATCGTCTGTTCCGGCAGAATGAGATCGTTCGCTCTCCTCGGGACGCTACGCTACGAACCTTCCCTCCGTCTGCTGGTGCCGAGTCTCCCCAGAACACCCCGTCCAGCACACACCCTAAGAAGcagggTAAACCCAGTAGTTTTCCCTGGCAGCTGCCGCCGTCCTGCAGTAACGGGCAGAGTAAAGTGGCAGCCTGGTTGCAGGAGTCAGAGGAGATGGACAAATGTGCAGAagAGCTCGCCTACTGCCAGTCCAGTCTTTTAGAGCTGAATCAACTTCTGCAGAGTCTGGAGATCTTACAGAGGACACAGTCAGCTCCCAACTTCACTGACAtgcagAGTAACTGTGTAGACTTGTCAAAGAAAGAAAAGCGCGTCAGCAGAAGATGGAGGACTAAAAGTGTCAGCAAAGATGCAAAATTGCAGCAGCAGgttcCCCTGAGTGCAAGCATGTCTCAAGTGCGCCTCCACTCCTCCAATCCTAACCTGTGCGCGGAGCTGGCTGATTTCCAGGCCCCCGTCACGCGTCTGACTGACGGCATCGACAGCGCCGGCGACTACATCAAACTGCAGGAAGATTTCTGCATCATTGCGCAGAAAGtgcACTCTCTTCTGAAGTCTGCCTTCAACACTGTGGCCATAGAGAAAGAGAAGATCAAGCAGGTGCTGCTGGACCATGAACAAACCGGCCAATCAAATCAGATTGTTACCCTCCGCCGCTCCCTATCACAGGCCTTGTCCCAGAATGCCGAGCTGAAGACGCGTCTGAACCGGATCCACTCAGAGTCGGTCCTGTCGGAGCAGGTCGTCAGTGTCAACATCATCAGCAGTCCTGACGAGgccTGTGAGCCTCTGCATGTGGGTCTGCCTCTCTCTCAGCAGGTCTCAAACGAGAGCAGACTCTCCATGTCAGAGTCGGTGTCGGAGTTCTTCGATGCTCAGGAGGTGCTTCTGTCCGCAAGCTCATCTGAGAACGAGgcCTCTGATGATGAGTCTTACGTCAGTGATGTGAGTGATAATATTTCCGAGGACAATGCCAGCGTCACAGATAACGTTTCCAGACAGATGCCTAATGGTGAGCTGGCCAGCAGTATGTTTCGTAACGGCAGACGTCCGTGTCTCCCGGCTCCTGCTCCCGACACCTCCAACATCAACCTGTGGAACATCCTGAAAAACAACATCGGCAAAGATCTGTCCAAAGTGTCCATGCCGGTGGAGCTGAACGAGCCGCTGAACACGCTGCAGCACATGTGTGAAGAACTGGAGTACACCGAGCTCCTGGATAAAGCAGCTCAGACTGACGACCCCTACGAGCGCATGgccatCGTTGCAGCGTTTGCAGTGTCAGGATATTCCTCCACCTACTATCGAGCGGGCAGCAAACCCTTTAACCCCCTTCTAGGGGAAACGTATGAATGCATCCGAGAAGACAAGGTGAGCCATCATCCGCCCATCTCCGCCTGTCACTGTGACTCCCAGAACTTCACCTTCTGGCAGGACGTCAGATGGAAGAATAAGTTTTGGGGGAAGTCAATGGAGATTCTCCCCATCGGGACAGTGAATGTGATGCTGCCCAGTTACGGTGATCACTATGAATGGAACAAGGTGACGACGTGCGTCCACAACATCCTGAGCGGCAGACGGTGGATCGAGCATTATGGAGAAGTGACCATCAGAAACACTCGCAGCACCACCTGCATCTGCAAACTCTCCTTCATAAAGggaaACTACTGGAGCTCAAATGTGAATGAGGTGCAGGGGTCAGTGATGGACCAGGAGGGCCGAGTCATTCACAGACTGTTCGGGAAGTGGCATGAGGGTCTGTACTGCGGAGTCCCACCTTCTGCCAAATGCATCTGGAgaccagGCTCGATGCCCACAGATTACGAGCTGTACTACGGCTTCACCAGGTTTGCAGTGGAGCTGAATGAGCTTTTCCCAGAGATGAAGGAGCTGCTGCCGCCGACTGACGCTCGATTCAGACCAGACCAGAGGTTTCTGGAGGAGGGAAACGTCCAGATGGCGACGGCCGAGAAACAGCGAATCGAGGAGCAGCAGAGAAACAGGAGGAAGTGGATGGAGGAGAACAACATCAAACACCAGCCGCGCTTCTTCAAGAAGGTGATGGACAGCAACCAGAGGGAGAGATGGGTGTCCAACAGCATGTACTGGGAGCTGCGCAAGGATCCAGGCTTCCTGAAGCTAGAAAACCCTGAGCTGTGGTAA
>TCONS_00073779
ATTCCAGCCACACACAGCACTTTCCCCTCACTTTCTGCACTTAATTCACCTCACCTCGACATCCTCCTCCAAAATAACCGACTGTCCGCGGGACTAAGCGCTGGGATAGCCGGATAAACAGCTTCCTCTTCGGCTACCGCTTCGCTAATTCACGGCAGCGTCGGCTTTCTGCGCcaagagatgatgatgatgatggtaatgatgTGGACACCGAACCGCTGGTGAACTTGTGCAGTAGTTTGACTGGTCATGCTGTGCTTTGGAGGGACGAGAGACACTAAGTAAACAAGCGAGTGGAGAGAAAGAAGAAAAACCGCAGCCTCCATCATGTCCCGCCATCAGAGCCGAACCACCAGCCTGGAGGAGAAAGTGGCCACGCCCATCCACAGAAGCACCGCCCCCTTGCAGAAAAGCTCCACCCCCACGCACAAGAGcgcctcctcctcctcgtcctcTCAGAGGGACAGTCGGCAGgaGCCGGACAGTTGGGAGATCATCGAGGGTCTGAGGATTGGACAGACTCATGTGCAGCGGCCCGAGAAGCACGAAGGCTTCATGCTGAAGAAGAGGAAGTGGCCTCTGAAGGGCTGGCACAAGCGTTTCTTCGTCCTGGATAACGGCATCCTGAAGTACTCCAAATCTCCAGTCGATattcaGAAAGGAAAGCTTCATGGCAGTATAGATGTGGGTCTGTCTGTGATGTCCATCAAGAAACGAGCTCGCCGCATCGACCTGGACACAGAGGAGCACATTTACCatctgaagGTGAAGTCTCCAGATGTGTTTGACCTCTGGGTGTGTAAGCTGCGTCACCATCGTCTGTTCCGGCAGAATGAGATCGTTCGCTCTCCTCGGGACGCTACGCTACGAACCTTCCCTCCGTCTGCTGGTGCCGAGTCTCCCCAGAACACCCCGTCCAGCACACACCCTAAGAAGggTAAACCCAGTAGTTTTCCCTGGCAGCTGCCGCCGTCCTGCAGTAACGGGCAGAGTAAAGTGGCAGCCTGGTTGCAGGAGTCAGAGGAGATGGACAAATGTGCAGAagAGCTCGCCTACTGCCAGTCCAGTCTTTTAGAGCTGAATCAACTTCTGCAGAGTCTGGAGATCTTACAGAGGACACAGTCAGCTCCCAACTTCACTGACAtgcagAGTAACTGTGTAGACTTGTCAAAGAAAGAAAAGCGCGTCAGCAGAAGATGGAGGACTAAAAGTGTCAGCAAAGATGCAAAATTGCAGCAGCAGgttcCCCTGAGTGCAAGCATGTCTCAAGTGCGCCTCCACTCCTCCAATCCTAACCTGTGCGCGGAGCTGGCTGATTTCCAGGCCCCCGTCACGCGTCTGACTGACGGCATCGACAGCGCCGGCGACTACATCAAACTGCAGGAAGATTTCTGCATCATTGCGCAGAAAGtgcACTCTCTTCTGAAGTCTGCCTTCAACACTGTGGCCATAGAGAAAGAGAAGATCAAGCAGGTGCTGCTGGACCATGAACAAACCGGCCAATCAAATCAGATTGTTACCCTCCGCCGCTCCCTATCACAGGCCTTGTCCCAGAATGCCGAGCTGAAGACGCGTCTGAACCGGATCCACTCAGAGTCGGTCCTGTCGGAGCAGGTCGTCAGTGTCAACATCATCAGCAGTCCTGACGAGgccTGTGAGCCTCTGCATGTGGGTCTGCCTCTCTCTCAGCAGGTCTCAAACGAGAGCAGACTCTCCATGTCAGAGTCGGTGTCGGAGTTCTTCGATGCTCAGGAGGTGCTTCTGTCCGCAAGCTCATCTGAGAACGAGgcCTCTGATGATGAGTCTTACGTCAGTGATGTGAGTGATAATATTTCCGAGGACAATGCCAGCGTCACAGATAACGTTTCCAGACAGATGCCTAATGGTGAGCTGGCCAGCAGTATGTTTCGTAACGGCAGACGTCCGTGTCTCCCGGCTCCTGCTCCCGACACCTCCAACATCAACCTGTGGAACATCCTGAAAAACAACATCGGCAAAGATCTGTCCAAAGTGTCCATGCCGGTGGAGCTGAACGAGCCGCTGAACACGCTGCAGCACATGTGTGAAGAACTGGAGTACACCGAGCTCCTGGATAAAGCAGCTCAGACTGACGACCCCTACGAGCGCATGgccatCGTTGCAGCGTTTGCAGTGTCAGGATATTCCTCCACCTACTATCGAGCGGGCAGCAAACCCTTTAACCCCCTTCTAGGGGAAACGTATGAATGCATCCGAGAAGACAAGGGATTCTGCTTCTTTTCTgaacagGTGAGCCATCATCCGCCCATCTCCGCCTGTCACTGTGACTCCCAGAACTTCACCTTCTGGCAGGACGTCAGATGGAAGAATAAGTTTTGGGGGAAGTCAATGGAGATTCTCCCCATCGGGACAGTGAATGTGATGCTGCCCAGTTACGGTGATCACTATGAATGGAACAAGGTGACGACGTGCGTCCACAACATCCTGAGCGGCAGACGGTGGATCGAGCATTATGGAGAAGTGACCATCAGAAACACTCGCAGCACCACCTGCATCTGCAAACTCTCCTTCATAAAGggaaACTACTGGAGCTCAAATGTGAATGAGGTGCAGGGGTCAGTGATGGACCAGGAGGGCCGAGTCATTCACAGACTGTTCGGGAAGTGGCATGAGGGTCTGTACTGCGGAGTCCCACCTTCTGCCAAATGCATCTGGAgaccagGCTCGATGCCCACAGATTACGAGCTGTACTACGGCTTCACCAGGTTTGCAGTGGAGCTGAATGAGCTTTTCCCAGAGATGAAGGAGCTGCTGCCGCCGACTGACGCTCGATTCAGACCAGACCAGAGGTTTCTGGAGGAGGGAAACGTCCAGATGGCGACGGCCGAGAAACAGCGAATCGAGGAGCAGCAGAGAAACAGGAGGAAGTGGATGGAGGAGAACAACATCAAACACCAGCCGCGCTTCTTCAAGAAGGTGATGGACAGCAACCAGAGGGAGAGATGGGTGTCCAACAGCATGTACTGGGAGCTGCGCAAGGATCCAGGCTTCCTGAAGCTAGAAAACCCTGAGCTGTGGTAA

Function

symbol description
osbpl6 Predicted to enable cholesterol binding activity and sterol transporter activity. Predicted to act upstream of or within lipid transport. Predicted to be active in cytosol; perinuclear endoplasmic reticulum; and plasma membrane. Orthologous to human OSBPL6 (oxysterol binding protein like 6).

GO:

id name namespace
GO:0006869 lipid transport biological_process
GO:0097038 perinuclear endoplasmic reticulum cellular_component
GO:0005829 cytosol cellular_component
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0015485 cholesterol binding molecular_function
GO:0015248 sterol transporter activity molecular_function
GO:0032934 sterol binding molecular_function
GO:0008289 lipid binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070912-206 Predicted to enable cholesterol binding activity and sterol transporter activity. Predicted to act upstream of or within lipid transport. Predicted to be active in cytosol; perinuclear endoplasmic reticulum; and plasma membrane. Orthologous to human OSBPL6 (oxysterol binding protein like 6).

Ensembl:

ensembl_id ENSDARG00000063730

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00073778 False 2712 mRNA 0.54 22 1391535 1434484
TCONS_00073779 True 3060 mRNA 0.54 23 1391535 1459985

Neighbor

gene id symbol gene type direction distance location
XLOC_037555 FP102120.4 coding downstream 12045 1379376 ~ 1379490 (-)
XLOC_037554 NA coding downstream 86112 1302937 ~ 1305423 (-)
XLOC_037553 gpr1 coding downstream 154687 1235778 ~ 1236848 (-)
XLOC_037552 ino80da coding downstream 191348 1187805 ~ 1200187 (-)
XLOC_037551 NA coding downstream 210081 1177901 ~ 1181454 (-)
XLOC_037557 rbm45 coding upstream 3067 1463052 ~ 1484202 (-)
XLOC_037558 NA coding upstream 3784 1463769 ~ 1780381 (-)
XLOC_037559 si:ch211-222f23.6 coding upstream 25249 1485234 ~ 1499721 (-)
XLOC_037560 agps coding upstream 129687 1589672 ~ 1639965 (-)
XLOC_037561 CU104777.1 coding upstream 182620 1642605 ~ 1649744 (-)
XLOC_037550 NA non-coding downstream 362885 1027015 ~ 1028650 (-)
XLOC_037549 CABZ01066922.1 non-coding downstream 387980 1003441 ~ 1003555 (-)
XLOC_037563 CR848724.1 non-coding upstream 288934 1748919 ~ 1749036 (-)
XLOC_037564 NA non-coding upstream 471443 1931428 ~ 1936169 (-)
XLOC_037566 dre-mir-10b-1 non-coding upstream 492971 1952956 ~ 1955923 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00001063 osbpl6 coding CM030137.1 CM030137.1 13404815 ~ 13433100 (+)