XLOC_037566 (dre-mir-10b-1)


Basic Information

Item Value
gene id XLOC_037566
gene name dre-mir-10b-1
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 1952956 ~ 1955923 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00073800
GTCTATATATACCCTGTAGAACCGAATTTGTGTGAAAAAATAACATTCACAGATTCGATTCTAGGGGAGTATATGGTC
>TCONS_00073801
CCGTGTCTTTATTTCCTCCTGAGATCAGAGTAATCGCCATTATTGAATAAGTGCAACTTTCAGGATTATTTATGGCACCCGCGCGCTGTCATGAATGGCTGTGGGGAAGCACGTGATACCATTAAACTTTGTTTTATGGCCAGGGAGTTGACAAGCCAAAATATAATTCACATTGTATATTAGAAAGGTCGTTCAGACGGTTTTAGAAAAGATCCCAGCATCGCCGCCGAGGAAAGACGCTCCACGCGTATTTTGATCATGGATATACAAATTTGCCGATGCGTTTTTGGAGATACGCCTGCTTCTGGAGTTTTGAGACCACCTGATCAATTTGCTTGCCATGGCACATCACAGAGTGAGTAGCATGTACGTCTTCAATCCTCACCTGGCGGATTATGATTTCAgttgtacttgtgtgtgtgtgtgtgtgtgttttttttttttttttttttttagatttatcgAATGAACAAATTATTTAGTTATAATTAGTAGTCGGATTTAAATATTAGGTCTGAGACATAATGCTATGAGAGAGCTCCTTCTGAAAATATGTCTTCGCTATGGAACATGTTGGGtattataatagattttttaagcACCACGAGTACCATGGACATGATATTAAATTTCATGAAAACCTAAGAGAAAACAGTTTAATGGCTTAATTGTACGTTGAGAAATTAAGCCTTTTTTCTCGATATTTTTGGTCAGTTGGTGAATATATGCCGTCGTCTATATATACC

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000080641 ENSDARG00000094186

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00073800 False 78 miRNA 0.36 1 1952956 1953033
TCONS_00073801 True 746 processed_transcript 0.38 2 1953021 1955923

Neighbor

gene id symbol gene type direction distance location
XLOC_037564 NA coding downstream 16787 1931428 ~ 1936169 (-)
XLOC_037563 CR848724.1 coding downstream 203920 1748919 ~ 1749036 (-)
XLOC_037562 hnrnpa3 coding downstream 249155 1692926 ~ 1703801 (-)
XLOC_037561 CU104777.1 coding downstream 303212 1642605 ~ 1649744 (-)
XLOC_037560 agps coding downstream 312991 1589672 ~ 1639965 (-)
XLOC_037567 hoxd9a coding upstream 8082 1964005 ~ 1965727 (-)
XLOC_037568 hoxd10a coding upstream 11784 1967707 ~ 1970071 (-)
XLOC_037569 hoxd11a coding upstream 19895 1975818 ~ 1978090 (-)
XLOC_037570 hoxd12a coding upstream 25959 1981882 ~ 1986014 (-)
XLOC_037571 hoxd13a coding upstream 30893 1986816 ~ 1990323 (-)
XLOC_037558 NA non-coding downstream 172575 1463769 ~ 1780381 (-)
XLOC_037555 FP102120.4 non-coding downstream 573466 1379376 ~ 1379490 (-)
XLOC_037572 NA non-coding upstream 194999 2150922 ~ 2173197 (-)
XLOC_037573 NA non-coding upstream 224596 2180519 ~ 2207258 (-)
XLOC_037574 BX255915.1 non-coding upstream 270540 2226463 ~ 2277636 (-)
XLOC_037575 CU639436.1 non-coding upstream 374938 2330861 ~ 2337303 (-)
XLOC_037576 NA non-coding upstream 426418 2382341 ~ 2389808 (-)

Expression


Co-expression Network