RNA id: TCONS_00073779


Basic Information

Item Value
RNA id TCONS_00073779
length 3060
RNA type mRNA
GC content 0.54
exon number 23
gene id XLOC_037556
representative True

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 1391535 ~ 1459985 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATTCCAGCCACACACAGCACTTTCCCCTCACTTTCTGCACTTAATTCACCTCACCTCGACATCCTCCTCCAAAATAACCGACTGTCCGCGGGACTAAGCGCTGGGATAGCCGGATAAACAGCTTCCTCTTCGGCTACCGCTTCGCTAATTCACGGCAGCGTCGGCTTTCTGCGCcaagagatgatgatgatgatggtaatgatgTGGACACCGAACCGCTGGTGAACTTGTGCAGTAGTTTGACTGGTCATGCTGTGCTTTGGAGGGACGAGAGACACTAAGTAAACAAGCGAGTGGAGAGAAAGAAGAAAAACCGCAGCCTCCATCATGTCCCGCCATCAGAGCCGAACCACCAGCCTGGAGGAGAAAGTGGCCACGCCCATCCACAGAAGCACCGCCCCCTTGCAGAAAAGCTCCACCCCCACGCACAAGAGcgcctcctcctcctcgtcctcTCAGAGGGACAGTCGGCAGgaGCCGGACAGTTGGGAGATCATCGAGGGTCTGAGGATTGGACAGACTCATGTGCAGCGGCCCGAGAAGCACGAAGGCTTCATGCTGAAGAAGAGGAAGTGGCCTCTGAAGGGCTGGCACAAGCGTTTCTTCGTCCTGGATAACGGCATCCTGAAGTACTCCAAATCTCCAGTCGATattcaGAAAGGAAAGCTTCATGGCAGTATAGATGTGGGTCTGTCTGTGATGTCCATCAAGAAACGAGCTCGCCGCATCGACCTGGACACAGAGGAGCACATTTACCatctgaagGTGAAGTCTCCAGATGTGTTTGACCTCTGGGTGTGTAAGCTGCGTCACCATCGTCTGTTCCGGCAGAATGAGATCGTTCGCTCTCCTCGGGACGCTACGCTACGAACCTTCCCTCCGTCTGCTGGTGCCGAGTCTCCCCAGAACACCCCGTCCAGCACACACCCTAAGAAGggTAAACCCAGTAGTTTTCCCTGGCAGCTGCCGCCGTCCTGCAGTAACGGGCAGAGTAAAGTGGCAGCCTGGTTGCAGGAGTCAGAGGAGATGGACAAATGTGCAGAagAGCTCGCCTACTGCCAGTCCAGTCTTTTAGAGCTGAATCAACTTCTGCAGAGTCTGGAGATCTTACAGAGGACACAGTCAGCTCCCAACTTCACTGACAtgcagAGTAACTGTGTAGACTTGTCAAAGAAAGAAAAGCGCGTCAGCAGAAGATGGAGGACTAAAAGTGTCAGCAAAGATGCAAAATTGCAGCAGCAGgttcCCCTGAGTGCAAGCATGTCTCAAGTGCGCCTCCACTCCTCCAATCCTAACCTGTGCGCGGAGCTGGCTGATTTCCAGGCCCCCGTCACGCGTCTGACTGACGGCATCGACAGCGCCGGCGACTACATCAAACTGCAGGAAGATTTCTGCATCATTGCGCAGAAAGtgcACTCTCTTCTGAAGTCTGCCTTCAACACTGTGGCCATAGAGAAAGAGAAGATCAAGCAGGTGCTGCTGGACCATGAACAAACCGGCCAATCAAATCAGATTGTTACCCTCCGCCGCTCCCTATCACAGGCCTTGTCCCAGAATGCCGAGCTGAAGACGCGTCTGAACCGGATCCACTCAGAGTCGGTCCTGTCGGAGCAGGTCGTCAGTGTCAACATCATCAGCAGTCCTGACGAGgccTGTGAGCCTCTGCATGTGGGTCTGCCTCTCTCTCAGCAGGTCTCAAACGAGAGCAGACTCTCCATGTCAGAGTCGGTGTCGGAGTTCTTCGATGCTCAGGAGGTGCTTCTGTCCGCAAGCTCATCTGAGAACGAGgcCTCTGATGATGAGTCTTACGTCAGTGATGTGAGTGATAATATTTCCGAGGACAATGCCAGCGTCACAGATAACGTTTCCAGACAGATGCCTAATGGTGAGCTGGCCAGCAGTATGTTTCGTAACGGCAGACGTCCGTGTCTCCCGGCTCCTGCTCCCGACACCTCCAACATCAACCTGTGGAACATCCTGAAAAACAACATCGGCAAAGATCTGTCCAAAGTGTCCATGCCGGTGGAGCTGAACGAGCCGCTGAACACGCTGCAGCACATGTGTGAAGAACTGGAGTACACCGAGCTCCTGGATAAAGCAGCTCAGACTGACGACCCCTACGAGCGCATGgccatCGTTGCAGCGTTTGCAGTGTCAGGATATTCCTCCACCTACTATCGAGCGGGCAGCAAACCCTTTAACCCCCTTCTAGGGGAAACGTATGAATGCATCCGAGAAGACAAGGGATTCTGCTTCTTTTCTgaacagGTGAGCCATCATCCGCCCATCTCCGCCTGTCACTGTGACTCCCAGAACTTCACCTTCTGGCAGGACGTCAGATGGAAGAATAAGTTTTGGGGGAAGTCAATGGAGATTCTCCCCATCGGGACAGTGAATGTGATGCTGCCCAGTTACGGTGATCACTATGAATGGAACAAGGTGACGACGTGCGTCCACAACATCCTGAGCGGCAGACGGTGGATCGAGCATTATGGAGAAGTGACCATCAGAAACACTCGCAGCACCACCTGCATCTGCAAACTCTCCTTCATAAAGggaaACTACTGGAGCTCAAATGTGAATGAGGTGCAGGGGTCAGTGATGGACCAGGAGGGCCGAGTCATTCACAGACTGTTCGGGAAGTGGCATGAGGGTCTGTACTGCGGAGTCCCACCTTCTGCCAAATGCATCTGGAgaccagGCTCGATGCCCACAGATTACGAGCTGTACTACGGCTTCACCAGGTTTGCAGTGGAGCTGAATGAGCTTTTCCCAGAGATGAAGGAGCTGCTGCCGCCGACTGACGCTCGATTCAGACCAGACCAGAGGTTTCTGGAGGAGGGAAACGTCCAGATGGCGACGGCCGAGAAACAGCGAATCGAGGAGCAGCAGAGAAACAGGAGGAAGTGGATGGAGGAGAACAACATCAAACACCAGCCGCGCTTCTTCAAGAAGGTGATGGACAGCAACCAGAGGGAGAGATGGGTGTCCAACAGCATGTACTGGGAGCTGCGCAAGGATCCAGGCTTCCTGAAGCTAGAAAACCCTGAGCTGTGGTAA

Function

GO:

id name namespace
GO:0006869 lipid transport biological_process
GO:0097038 perinuclear endoplasmic reticulum cellular_component
GO:0005829 cytosol cellular_component
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0015485 cholesterol binding molecular_function
GO:0015248 sterol transporter activity molecular_function
GO:0032934 sterol binding molecular_function
GO:0008289 lipid binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070912-206 Predicted to enable cholesterol binding activity and sterol transporter activity. Predicted to act upstream of or within lipid transport. Predicted to be active in cytosol; perinuclear endoplasmic reticulum; and plasma membrane. Orthologous to human OSBPL6 (oxysterol binding protein like 6).

Ensembl:

ensembl_id ENSDART00000124777

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00075257 lncRNA downstream 86112 1302937 ~ 1305423 (-) True XLOC_037554
TCONS_00075256 lncRNA downstream 210081 1177901 ~ 1181454 (-) True XLOC_037551
TCONS_00075255 lncRNA downstream 362885 1027015 ~ 1028650 (-) True XLOC_037550
TCONS_00073771 lncRNA downstream 501968 880748 ~ 889567 (-) True XLOC_037546
TCONS_00075254 lncRNA downstream 617879 772863 ~ 773656 (-) True XLOC_037542
TCONS_00075258 lncRNA upstream 3784 1463769 ~ 1717647 (-) False XLOC_037558
TCONS_00075262 lncRNA upstream 3784 1463769 ~ 1780381 (-) False XLOC_037558
TCONS_00075264 lncRNA upstream 3784 1463769 ~ 1780381 (-) False XLOC_037558
TCONS_00075266 lncRNA upstream 3784 1463769 ~ 1780381 (-) False XLOC_037558
TCONS_00075268 lncRNA upstream 3784 1463769 ~ 1780381 (-) False XLOC_037558
TCONS_00073776 mRNA downstream 154687 1235778 ~ 1236848 (-) True XLOC_037553
TCONS_00073775 mRNA downstream 191348 1187805 ~ 1200187 (-) True XLOC_037552
TCONS_00073773 mRNA downstream 441531 925969 ~ 950004 (-) True XLOC_037548
TCONS_00073772 mRNA downstream 487308 900392 ~ 904227 (-) True XLOC_037547
TCONS_00073770 mRNA downstream 542466 844221 ~ 849069 (-) True XLOC_037545
TCONS_00073780 mRNA upstream 3067 1463052 ~ 1483879 (-) False XLOC_037557
TCONS_00073781 mRNA upstream 4809 1464794 ~ 1469083 (-) False XLOC_037557
TCONS_00073782 mRNA upstream 4876 1464861 ~ 1484202 (-) True XLOC_037557
TCONS_00073783 mRNA upstream 25249 1485234 ~ 1499721 (-) True XLOC_037559
TCONS_00073784 mRNA upstream 129687 1589672 ~ 1604601 (-) False XLOC_037560
TCONS_00073777 other downstream 12045 1379376 ~ 1379490 (-) True XLOC_037555
TCONS_00073774 other downstream 387980 1003441 ~ 1003555 (-) True XLOC_037549
TCONS_00073788 other upstream 184698 1644683 ~ 1644761 (-) True XLOC_037561
TCONS_00073793 other upstream 288934 1748919 ~ 1749036 (-) True XLOC_037563
TCONS_00073794 other upstream 471455 1931440 ~ 1934086 (-) True XLOC_037564
TCONS_00073798 other upstream 479000 1938985 ~ 1959552 (-) False XLOC_037565
TCONS_00073800 other upstream 492971 1952956 ~ 1953033 (-) False XLOC_037566

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000353_00818227_00860645.mRNA False 2996 mRNA 0.50 23 CI01000353 818227 ~ 860770 (+)
bowfin (Amia calva) AMCG00001063 True 5627 mRNA 0.42 21 CM030137.1 13404815 ~ 13433100 (+)