RNA id: TCONS_00073775


Basic Information

Item Value
RNA id TCONS_00073775
length 2798
RNA type mRNA
GC content 0.58
exon number 10
gene id XLOC_037552
representative True

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 1187805 ~ 1200187 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

cTGATGTTCTCAGGGACCAGAGTCACGTGATGTACGAAGGTAAACACATCCATTTCTCAGAGGTGGATAATAAGCCGCTGTGCTCCTACAGCCCCAAACTCTGTAAGCAGCGCAGACTGAACGGATACGCCTTCTGCATCCGCCATGTTCTGGAGGACAAAACGGCCCCGTTTAAGCAGTGCGAATATGTGGCCAAGTACAACAGTCAGCGATGCACAAACCCCATCCCCAAAGCAGAGGAGCGAAGATACTGTAACAGTCACCTACAAGTGCTGGGCTTTATCCCAAAGAAGGAGCGCAAGAAGAAGCAGGATGGTCTGGAGGAGGTCCGCAGCCGCGCTCATGTGGAGTCGGTGGCTTTGAACATCACGGTTCCCTCTCTGGCTCTGCGGGACACAAACGGCCTGCCCGCGTCCCCGCCCTGCTCCCGCCTAACCCCCATGCCCCTGCTGGACTCCGACCTCCTCGACCCCTTCGCCTTTTATGAGGAGGACTCGGATGTGGAGGAGAGCCTGCTGCAGAGGCCTGCACAGAGGAGCTCCAGCAAGAGGAAAGCGTCCAGCACTCCTGTGATCGGCCTGAGAGTCACCGCACGCGACCTGGAGCCAGACATCGAGCACTTTAGCGCCGTCACTGAATCCTGCACACTTCCCAGCTCCCCTCCACCACCTCCACCTTCTCCACCCCAGCCCTCCCAGCACACAGAGCGGCCCACATATGCCCCGCTCGGGACAGTACAGACTCTGCTATGCAAGCCGGCTCCACCTGAGAGCGCGTCGTCTGTCCCGCTCCCGCCGGCTGGGCTCCAGAATCAGCCTGTGATCTGGAGACCTGCATCCCCTCGGCCGCTGTCTGCTCATGACTGCCCGCAGCCTCGCTCTGTGGCCCTGCGCCCCGCCGCCTTCACTGCGCCCCCTGTCTGCCTGCTCAGGCTACAGCATCTGGTGCAGCTCTATGCGAACAGACAGCGGGAGCATGGAGACCTGTTCCCACATCTCGgtttagACTGGTCTGAAGACAGTGCAGATGATGAAGACACAGAGGAGCTTGTTCCTTTATTGCCTCAGGCCTGGAGACTTCAGGAAAGAAGCCCCCATCAAAGctcCTCCAGTGACAAGCCTCTGTCCCGGCGGGCCCGACTGGCTCAGCTCTGCTCGTACCTGCAGGAGAGATATAAACACCTGTGCCGACGGGACCGAGCCGCCAGCCGGCACAGCAGATACCGTTACGCCTTCCGGAAAGCACTGCTACATGCTGCTAGCAAAGACCCCGACTGCACGGCACAGCTCATTCAGAAACTCAGCAGGAGCTCGCAGACCTCCAGCTGttcAAGGTCTGCAGCTCCACACAAGTATGAAAGGACAGCGTGTACGGGAAGCACTAAGGGTCAGAGCTGCAGCAACACAGCGCTGCCATTCTCACGCCACTGTTTTCAGCATATCCTACTGAATCGCTCTCAGCAGCTGTTCTCCAGCTGTACGGCACGGTTTGCAGACGGACAGCAGTGCTCAGTCCCTGTGTTCGACATCACTCACCAAACACCTCTCTGTGACGAACATGCCAAGAAAATGGATAATTTCCTGCGTGGAGACGGCCACAGACGcagtcagcagcagcagcagcgacGTCCACGAAAGAAGACCAAGCCACCCGCGCTGACCAAGAAACACAAGAAGAAGAGAAGACGAGGTCCACGCAGACCACAGAAGCCCATTCCTCCAGCTGTGCCACAGGGCAATTTACTGATGCCCTCGCTTTCACTGCCCACTCACCACGCTCACGTCAGGAGTCCGTCAACTCCTGAACTCAGTGCAGACGAGCTTCCTGACGACATCGCAAATGAAATGCCCGACATTCCCAACGATCTCGAGCTCAATCAGGAAGATTTCTCTGACGTGCTGCCCAGATTACCCGATGATCTTCAGGACTTTGACCTTTTTGAGGGTAAGAATGGAGAGTTGCTGCCCACAACAGAAGAGGCTGAAGAGCTGGTCAGAGCCCTGCAGGCCATGGGCTCGTACCCCGACTCGCTGGTGTGCTTGTCCTCAATAGGAGAGCTGACGCAGGCAGATGGGGTGGACCACCGCACCATGGCCACCGTGTTCTCGGGATCAGGAGTCACACCCGCCGGCATCGGAGACCTGCTGAACGGTAGAATCACATCTGAAACTTTCCCCAATCTAGACCTCCTCCACGCCCAAACAGACCACCATTTCCCATCATCCCCTTCTCCTCAGCCCACTCAAAGCAGCGCGTCCTCCACAAGTCCCAGTAGTGGGCTAACAGAACGAACGTTTCCTCGAGCACCCAAACCGGACTCCTCTCCGCCAGGTAGTCATTACAGCAGCGAGCACGTGCCATCGCCCTACAGGGATCACATCTCACCCCCACACGGTGCCTCTTTTCAGACCGACCCGCCTCTGCTTCTGGAGGTGCCTTTGAGTGGAGCACCAGGACCTCCGCGCACCTCCTGGAATAACCTTCCTCTTTCACTTACAGACCCGGCGCAATTCGGCAACTTGCTCACTGCAGAAACGCACCTACTTTCCACGGCTTTGTCCACCCCGCCATCTACATCCCATTGCTCCGCAATCCTGCAGCCTTCCTCATCCTCACCCTCCTCAAGGGAGCCCAAACTACAGCTCCCACAATTCAGCGCAGCCTTCGGACACCAATTGGCTTCCCACAGCGGGATCCCCAAAGACCTGCAGCCCAGCCATAGCTCCACAGCGCCACCTACAGGCTTTAGCATTACTAGCGCCACTGCCGCCACTCCACCGTTCCCTCAGAGCAACTGA

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000158760

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00075256 lncRNA downstream 6351 1177901 ~ 1181454 (-) True XLOC_037551
TCONS_00075255 lncRNA downstream 159155 1027015 ~ 1028650 (-) True XLOC_037550
TCONS_00073771 lncRNA downstream 298238 880748 ~ 889567 (-) True XLOC_037546
TCONS_00075254 lncRNA downstream 414149 772863 ~ 773656 (-) True XLOC_037542
TCONS_00075253 lncRNA downstream 429389 757593 ~ 758416 (-) True XLOC_037541
TCONS_00075257 lncRNA upstream 102750 1302937 ~ 1305423 (-) True XLOC_037554
TCONS_00075258 lncRNA upstream 263582 1463769 ~ 1717647 (-) False XLOC_037558
TCONS_00075262 lncRNA upstream 263582 1463769 ~ 1780381 (-) False XLOC_037558
TCONS_00075264 lncRNA upstream 263582 1463769 ~ 1780381 (-) False XLOC_037558
TCONS_00075266 lncRNA upstream 263582 1463769 ~ 1780381 (-) False XLOC_037558
TCONS_00073773 mRNA downstream 237801 925969 ~ 950004 (-) True XLOC_037548
TCONS_00073772 mRNA downstream 283578 900392 ~ 904227 (-) True XLOC_037547
TCONS_00073770 mRNA downstream 338736 844221 ~ 849069 (-) True XLOC_037545
TCONS_00073768 mRNA downstream 374112 795609 ~ 813693 (-) False XLOC_037544
TCONS_00073769 mRNA downstream 374294 795716 ~ 813511 (-) True XLOC_037544
TCONS_00073776 mRNA upstream 35591 1235778 ~ 1236848 (-) True XLOC_037553
TCONS_00073778 mRNA upstream 191348 1391535 ~ 1434484 (-) False XLOC_037556
TCONS_00073779 mRNA upstream 191348 1391535 ~ 1459985 (-) True XLOC_037556
TCONS_00073780 mRNA upstream 262865 1463052 ~ 1483879 (-) False XLOC_037557
TCONS_00073781 mRNA upstream 264607 1464794 ~ 1469083 (-) False XLOC_037557
TCONS_00073774 other downstream 184250 1003441 ~ 1003555 (-) True XLOC_037549
TCONS_00073777 other upstream 179189 1379376 ~ 1379490 (-) True XLOC_037555
TCONS_00073788 other upstream 444496 1644683 ~ 1644761 (-) True XLOC_037561
TCONS_00073793 other upstream 548732 1748919 ~ 1749036 (-) True XLOC_037563
TCONS_00073794 other upstream 731253 1931440 ~ 1934086 (-) True XLOC_037564
TCONS_00073798 other upstream 738798 1938985 ~ 1959552 (-) False XLOC_037565

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000353_01684182_01694317.mRNA True 3398 mRNA 0.54 9 CI01000353 1683632 ~ 1694384 (-)