RNA id: TCONS_00075264


Basic Information

Item Value
RNA id TCONS_00075264
length 2428
lncRNA type read_through
GC content 0.30
exon number 15
gene id XLOC_037558
representative False

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 1463769 ~ 1780381 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ttacttaataaagtgagtaaacctgttgcttttaaagcgattagttgactttacttaataaagtgagtaaacctgttgcttttaaagcgattagttgactttacttaataaagtgagtaaacctgttgcttttaaagcgattagttgactttacttaataaagtgagtaaacctgttgctgttaaagcgattagttgactttacttaataaagtgagtaaacctgttgcttttaaagcgattagttgactttacttaataaagtgagtaaacctgttgcttttaaagcgattagttgactttactttaaaaagtgagtaaacctgttgcttttacagcgattagttgactttactttaataaagtgagtaaacctgttgcttttaaagcgattagttgactttactttaataaagtgaggaaacctgttgcttttaaagcgattagttgactttacttaataaagtgagtaaacctgttgcttttaaagcgattagttgactttacttaataaagtgagtaaacctgttgcttttaaagcgattagttgactttactttaataaagtgagtaaacctgttgcttttaaagcgattagttgactttactttaataaagtgagtaaacctgttgcttttaaagtgattagttgactttactttaataaagtgaggaaacctgttgcttttaaagtgattagttgacttaaagtgagtaaacctgttgcttttaaagcgattagttgactttacttaataaagtgagtaaacctgttgcttttaaagcgattagttgactttacttaataaagtgagtaaacctgttgcttttaaagcgattagttgactttactttaataaagtgagtaaacctgttgcttttaaagcgattagttgactttacttaataaagtgagtaaacctgttgcttttaaagcgattagttgactttacttaataaagtgagtaaacctgttgcttttaaagtgattagttgactttgctttaataaagtgagtaaacctgttgcttttaaagcgattagttgactttacttaataaagtgagtaaacctgttgcttttaaagcgattagttgactttacttaataaagtgagtaaacctgttgcttttaaagcgattagttgactttacttaataaagtgagtaaacctgttgcttttaaagtgattagttgacttaaagtgagtaaacctgttgcttttaaagcgattagttgactttacttaataaagtgagtaaacctgttgcttttaaagcgattagttgactttacttataaagtgagtaaacctgttgcttttaaagcgattagttgactttactttaataaagtgagtaaacctgttgcttttaaagcggttagttgactttactttaataaagtgagtaaacctgttgcttttaaagcgattagttgactttactttaataaagtgagtaaacctgctgcttttaaagcgattagttgactttacttataaagtgagtaaacctgttgcttttaaagcgattagttgactttacttaataaagtgagtaaacctgttgcttttaaagcgattagttgactttactttaataaagtgagtaaacctgttgcttttaaagcgattagttgactttactttaataaagtgagtaaacctgttgcttttaaagcgattagttgactttactttaataaagtgaggaaacctgttgcttttaaagcgattagttgactttactttaataaagtgagtaaacctgttgcttttaaagcgattagttgactttacttgataaagtgagtaaacctgttgcttttgaagcgattagttgactttacttaataaagtgagtaaacctgttgcttttaaagcgattagttgactttacttaataaagtgagtaaacctgttgcttttaaagcgattagttgactttacttaataaagtgagtaaacctgttgcttttacagcgattagttgactttacttaataaagtgagtaaacctgttgcttttaaagcgattagttgactttacttaataaagtgagtaaacctgttgcttttaaagcgattagttgactttacttgataaagtgagtaaacctgctgcttttgaagcgattagttgactttactttaataaagtgagtaaacctgttgcttttaaagcgattagttgactttacttaataaagtgagtaaacctgttgcttttaaagcgattagttgactttacttaataaagtgagtaaacctgttgcttttaaagcgattagttgactttacttaataaagtgagtaaacctgttgcttttacagcgattagttgactttacttaataaagtgaggaaacctgttgcttttaaagcgattagttgactttacttaataaagtgagtaaacctgttgctt

Function

GO:

id name namespace
GO:0007268 chemical synaptic transmission biological_process
GO:0001505 regulation of neurotransmitter levels biological_process
GO:0098916 anterograde trans-synaptic signaling biological_process
GO:0002088 lens development in camera-type eye biological_process
GO:0007626 locomotory behavior biological_process
GO:0099536 synaptic signaling biological_process
GO:0099537 trans-synaptic signaling biological_process
GO:0009449 gamma-aminobutyric acid biosynthetic process biological_process
GO:0006836 neurotransmitter transport biological_process
GO:0042995 cell projection cellular_component
GO:0043005 neuron projection cellular_component
GO:0044456 obsolete synapse part cellular_component
GO:0120025 plasma membrane bounded cell projection cellular_component
GO:0045202 synapse cellular_component
GO:0097458 obsolete neuron part cellular_component
GO:0005212 structural constituent of eye lens molecular_function
GO:0004351 glutamate decarboxylase activity molecular_function
GO:0008324 cation transmembrane transporter activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00075257 lncRNA downstream 158346 1302937 ~ 1305423 (-) True XLOC_037554
TCONS_00075256 lncRNA downstream 282315 1177901 ~ 1181454 (-) True XLOC_037551
TCONS_00075255 lncRNA downstream 435119 1027015 ~ 1028650 (-) True XLOC_037550
TCONS_00073771 lncRNA downstream 574202 880748 ~ 889567 (-) True XLOC_037546
TCONS_00075254 lncRNA downstream 690113 772863 ~ 773656 (-) True XLOC_037542
TCONS_00075273 lncRNA upstream 151047 1931428 ~ 1933872 (-) False XLOC_037564
TCONS_00075274 lncRNA upstream 151047 1931428 ~ 1935847 (-) False XLOC_037564
TCONS_00075276 lncRNA upstream 151047 1931428 ~ 1936169 (-) False XLOC_037564
TCONS_00075275 lncRNA upstream 151047 1931428 ~ 1936169 (-) False XLOC_037564
TCONS_00075277 lncRNA upstream 370541 2150922 ~ 2171296 (-) False XLOC_037572
TCONS_00073779 mRNA downstream 3784 1391535 ~ 1459985 (-) True XLOC_037556
TCONS_00073778 mRNA downstream 29285 1391535 ~ 1434484 (-) False XLOC_037556
TCONS_00073776 mRNA downstream 226921 1235778 ~ 1236848 (-) True XLOC_037553
TCONS_00073775 mRNA downstream 263582 1187805 ~ 1200187 (-) True XLOC_037552
TCONS_00073773 mRNA downstream 513765 925969 ~ 950004 (-) True XLOC_037548
TCONS_00073795 mRNA upstream 156668 1937049 ~ 1939232 (-) False XLOC_037565
TCONS_00073796 mRNA upstream 156671 1937052 ~ 1959917 (-) False XLOC_037565
TCONS_00073797 mRNA upstream 157305 1937686 ~ 1949915 (-) False XLOC_037565
TCONS_00073799 mRNA upstream 168084 1948465 ~ 1951144 (-) True XLOC_037565
TCONS_00073802 mRNA upstream 183624 1964005 ~ 1965727 (-) True XLOC_037567
TCONS_00073777 other downstream 84279 1379376 ~ 1379490 (-) True XLOC_037555
TCONS_00073774 other downstream 460214 1003441 ~ 1003555 (-) True XLOC_037549
TCONS_00073794 other upstream 151059 1931440 ~ 1934086 (-) True XLOC_037564
TCONS_00073798 other upstream 158604 1938985 ~ 1959552 (-) False XLOC_037565
TCONS_00073800 other upstream 172575 1952956 ~ 1953033 (-) False XLOC_037566
TCONS_00073801 other upstream 172640 1953021 ~ 1955923 (-) True XLOC_037566
TCONS_00073808 other upstream 446082 2226463 ~ 2277492 (-) False XLOC_037574

Expression Profile

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