RNA id: TCONS_00073768


Basic Information

Item Value
RNA id TCONS_00073768
length 1923
RNA type mRNA
GC content 0.49
exon number 17
gene id XLOC_037544
representative False

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 795609 ~ 813693 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GACTGTCAAAAGCGTTTGATTCCTCCACCTGCAGATTTGTTCCTTATTCTTGGGAAGGCCTTCCTCTTGTCAGATGACCGATGTTTTGATGAGCCAGCGTATACTTTTCCCGTTTTCTGCGGTTGTGTTTTTAAGAGCCGCTCCTGGTTGTGTACTGGTCAGTGTGCATGCTGGACTGACCGATGGAGACAGAAGTGGACGATTTCCCAGGGAAGGCTTCGATATTCAGCCAGGTCAACCCTCTGTATAGCAACAACATGAAGCTCTGTGAGGCCGAGCGATACGACTTCCAGCACAGCGagCCCAAAACTATGAAATCAGCGAGCAAACGTCACTGTGTTCCTGTCCTCATTCTGCTTTTCCTGCTGCTGATTGGACTCAATTCATTTCTGGCTTATAAAGTCTTTACACTGGAGGCTTGGGTTCACACACACTGTACATCAGCTCAAAACCATGAACTCACGTCTGCTTCCAGCTTCCAGTTGGGCAGCTCCAAAAACGAAGTGgAATGCTTTACTGATCTATGTGGAACTGATGGAACATTAGAACACCTTAGGACTCAAATTAACCAACTCAATGCTACTGCAGAAAAAGcCATCGTTTGCCCGCCTGGACCACCTGGACCACCAGGTTCTAATGGAATTCCAGGGTTCCCGGGACAGAAAGGAATTCCAGGCTCACCAGGTAGGGTGGGAGAACCTGGAGCTCCGGGTCAAAAAGGACAGACAGGAGATCCTGGTATAAAAGGGGAAAGAGGGATGGTTGGCTTCCCGGGTATACCTGGTGCTCCTGGGAGGAAGGGAGATTCAGGAGAGAGAGGATTACAAGGTTTACCAGGCAATGATGGTAGTCCAGGTCAAGATGGCAGGACTGGTCCTCAGGGGATGCCAGGGCCCAGTGGAAGCCAAGGGGTAAAAGGAGACCCGGGTCTCAAAGGTGAGCGTGGAGACCAGGGACCACCAGGTCCTACAGGGCCTCAAGGTTCATCGGGGGCTCGCGGATTGCAAGGAATACCTGGAGAAAAAGGCTCACCTGGACCTAAGGGAGACACTGGAGTTGGCCTTCAAGGACCCACAGGACAACAGGGGCAAAAGGGAAGTCAAGGAGTGCCAGGTGTCCCAGGAGCTCGAGGTGCGAATGGAGAAAAGGGTGATCGAGGTCTATCAGGGCAAAAGGGAGATCAAGGTCCAAAGGGGGAGAAAGGTGATGCAGGAGCCAAGGGTGCGAGTGGGGGATCGCAAGTGGTCCGTCTCGTGGGAAGCTCCACCCGTGGAAGAGTGGAGGTGTTTTATCAGAACGTCTGGGGGACGGTGTGTGACGACAGCTTCGATAATTTGGATGCGCTGGTGGTGTGTAGAATGCTGGGCTTCCAGAGATCCACACAGGTCTACACTGACGGTTCAGGATCTGGACGCATCTGGCTGGATGAGTTGAGATGCACTGGAACCGAGAGCAGTATTTTTAACTGTCCACATGCAGGAATGGGAATCAACAACTGTGGCCACGGCGAGGATGTGGGAGTtagctgtgcatgaaaataatgAACTATTGATGGATTTCAGTCAACCAATATTTCACTGATGTTTGTCAGTTCTCCATGCACAGATGTAGATCATGGGATGACCATATGTCTCCAGTGTTCAGATGTGTTGGAGCAAAACATCTTTTGTCAGATGCTATGCTTGTGATGTGGAAAATAtgcaattttaaatgtattaaaattacatttttgggccTGTGGACATTATGAATGTATGAGCACCACAACAAATTACTCTAATATTAAACTATAACACTGTTCTGACTaatgcttaaatgtgtacacacagcaaaataaacaGGCAAATATTTTTAGGTCTTTTGTTGATTTCTGTACACCCAACATTCTGTCACATTTCTCCCATTGTCCTTTTTTAAAAGGGC

Function

GO:

id name namespace
GO:0006909 phagocytosis biological_process
GO:0042742 defense response to bacterium biological_process
GO:0030198 extracellular matrix organization biological_process
GO:0031012 extracellular matrix cellular_component
GO:0005615 extracellular space cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005201 extracellular matrix structural constituent molecular_function
GO:0005044 scavenger receptor activity molecular_function

KEGG:

id description
ko04145 Phagosome
ko04131 Membrane trafficking

ZFIN:

id description
ZDB-GENE-120514-2 Predicted to be an extracellular matrix structural constituent. Acts upstream of or within defense response to bacterium and phagocytosis. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in extracellular matrix and extracellular space. Human ortholog(s) of this gene implicated in pulmonary tuberculosis. Orthologous to human MARCO (macrophage receptor with collagenous structure).

Ensembl:

ensembl_id ENSDART00000174793

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00075254 lncRNA downstream 21953 772863 ~ 773656 (-) True XLOC_037542
TCONS_00075253 lncRNA downstream 37193 757593 ~ 758416 (-) True XLOC_037541
TCONS_00074957 lncRNA downstream 49462 740669 ~ 746147 (-) True XLOC_037540
TCONS_00073757 lncRNA downstream 332388 461219 ~ 463221 (-) False XLOC_037537
TCONS_00075252 lncRNA downstream 357806 434375 ~ 437803 (-) True XLOC_037533
TCONS_00073771 lncRNA upstream 67055 880748 ~ 889567 (-) True XLOC_037546
TCONS_00075255 lncRNA upstream 213322 1027015 ~ 1028650 (-) True XLOC_037550
TCONS_00075256 lncRNA upstream 364208 1177901 ~ 1181454 (-) True XLOC_037551
TCONS_00075257 lncRNA upstream 489244 1302937 ~ 1305423 (-) True XLOC_037554
TCONS_00075258 lncRNA upstream 650076 1463769 ~ 1717647 (-) False XLOC_037558
TCONS_00073767 mRNA downstream 10165 778745 ~ 785444 (-) True XLOC_037543
TCONS_00073766 mRNA downstream 49292 711638 ~ 746317 (-) False XLOC_037540
TCONS_00073765 mRNA downstream 49292 711638 ~ 746317 (-) False XLOC_037540
TCONS_00073764 mRNA downstream 83301 707889 ~ 712308 (-) False XLOC_037540
TCONS_00073763 mRNA downstream 84713 707086 ~ 710896 (-) False XLOC_037540
TCONS_00073770 mRNA upstream 30528 844221 ~ 849069 (-) True XLOC_037545
TCONS_00073772 mRNA upstream 86699 900392 ~ 904227 (-) True XLOC_037547
TCONS_00073773 mRNA upstream 112276 925969 ~ 950004 (-) True XLOC_037548
TCONS_00073775 mRNA upstream 374112 1187805 ~ 1200187 (-) True XLOC_037552
TCONS_00073776 mRNA upstream 422085 1235778 ~ 1236848 (-) True XLOC_037553
TCONS_00073774 other upstream 189748 1003441 ~ 1003555 (-) True XLOC_037549
TCONS_00073777 other upstream 565683 1379376 ~ 1379490 (-) True XLOC_037555
TCONS_00073788 other upstream 830990 1644683 ~ 1644761 (-) True XLOC_037561
TCONS_00073793 other upstream 935226 1748919 ~ 1749036 (-) True XLOC_037563
TCONS_00073794 other upstream 1117747 1931440 ~ 1934086 (-) True XLOC_037564

Expression Profile

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