RNA id: TCONS_00073787


Basic Information

Item Value
RNA id TCONS_00073787
length 2441
lncRNA type lincRNA
GC content 0.39
exon number 2
gene id XLOC_037561
representative False

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 1642605 ~ 1649744 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTGTGTTCAGTTTTTGACTAGGAGAACAGTGAAGTGCACTCCGTTTTTTTCTCTCCCCCCGTCCTAAGCGCGTGCGTGATTGCGCGCGCACGGTTGGCAGCTCCACGTCGACATTCTCCAGCTGAAGCTCTTCATCCACAGCTTGCAGGATCTCCAGTGTTCAGCAGCTCCAGACAGAGAAACAAGCAGACCCAGAGCTTCTCCAGGAACCCACAGACCGACTGAATGACCGAGAGCTGCAGCAGATGGCGGAAGAGTGCGAATATCATCAAGCAGCTCTCTGGCTTTCCAAGTAAAGTTCTGTGATACACTCCGACTCTGAATGTTTGCAGTCAGTGCATTACAGAACTTTGTTTTGGGAGTTTAAAGCTCAGGCCTGGAGGAGAAAAGCATGAAAACGACGTCGTGTTCCTcgacaacacacacaaaacatcatTACAATTACCACCATCTCATGCTCGTTCCCTTACCTTCAACTGCTATCCCCAAAAttcaatgtgtttgtgtgtgttatgtaCGTGATCTGTTTTCAGAGTGTGTTTTCCAAGCACTCAATTAGCATAGCGAAGGCTATACCACAATTGCTAAACGGCTAAAAATAAGCGTTGCGCAGTAACACAGCTCTTTCCAATTAAACATTCCTTTCCGAAACctcactcaacacagaaatgcggCATTTTTTCCCATTGTTGTAAAAAGGAATGCATTTCACATGTAGAAGAAGGGAAAGTGTGTGAAATGGGTTTAGGTTTGTGATGACATCATCAGGAGGCGGTCACATGACTCTGAAGAGCACAGGTAACACTCTGATATACAGCGGGgagaataagtattgaacacgttgTCGTGTTTTTTCCTGGGAGTTATATTTGTGAAGGGaatggaattgaagcagattttgatttaaaaacccgaacaatacaaacataaaaataaaattaaacacgtTTATTAAGTTACGTTTAATAACAGTGGAAAGACAGGAGGAggaagtgctgaactactgaagtGTACTTAATTGGTGCTGGATGCCTCTCATATGAATAAAGAAGTCCCATGTCTTGCTCAGGTgcttctcacagacttcaacagagtttCAAACTCTTgatagttctgtgggtctcgtctatcaaatctgagctttatctgaattctctattggattcgagtcaggGGATTgtttgggccattctacagcttgattctCTTTCACTGAAAGCATccgagagtctccttggctgtgttttggatcattgtcttgctgaaatgtccaccctgggttcatcttcatcctcctgctgatgtagatgttggactgaagcagctgatgttcatttacactgaggaagggcagaggcttgctgaagaactactgagagatttcagctgctgtctgggctttcactgctgaaCTACGCCTCCCTTTCTTCGTgtgttcaatctttttttttttttcctgtgtcatttaattttattacactggATATAATTTGTAAATTACATGTGTTTTCTTTGTATATATGGATTTCACTGGTTGTTCCCAACATCCGgggaacatttcaagtcaacagcatcattagaaatatgttttctcgGATAAATAAGGATGTGTTCGAGAACAAAGGATTGTCCcttctgtaaatgttttatttgtaatatcTACGCAAGTGCTGTTaatggccagaagttaacaagaattatttctCTACAGTTAATGTACaataataattactgtttttacttcACTGTGAGTGTTGGGTTTCGGggtatacattaataaaatacaatttaatgggtgaattaataaataataataagaatactctgtgaaattactgtttttactgtactgtgggggttaggtttagggggtagatgcaaaaataaaatgtattggtaatttggtaaataatataaataattcttgctAACTTCCGGctacagctgtatcccttctgaTGATATTTGTCACAACACTGTTACATGCAGCGAGATTGGATCCCTTCAACCATACAAACATCAGATTTGTGTGATTTTTGTGTGACACATTTGAGATTTCAGGGGAACATAGGTCAGTTGAGAGGTTGCATAGAAAGAAGAAATGAGATGCATTAGGGGGGGAGAAAGgaggtaaagaaaaaaaaactgtccttgAAGTAGGGCAGAGTGAGATCAGGGGGAAAAAGTTTTACGACctgggcaccttgatgtcaaaacaacatcaaattgacatctaaaattggCGTCAGGACAGTCCTATAATCAAAccaattttttacatattttaacagCAACGTAGATGTCGATTTGACATCAAGGTAATCAATTGACGTTAAAATTGATTCTAGGTAGTTTCCTTGCATTGAAGGGgtacaaaataaagtttttatttgtaactgaagttttgaaaattaataaaatatatatatatttagctatAA

Function

GO:

id name namespace
GO:0001732 formation of cytoplasmic translation initiation complex biological_process
GO:0009888 tissue development biological_process
GO:0060429 epithelium development biological_process
GO:0005852 eukaryotic translation initiation factor 3 complex cellular_component
GO:0005854 nascent polypeptide-associated complex cellular_component
GO:0033290 eukaryotic 48S preinitiation complex cellular_component
GO:0016282 eukaryotic 43S preinitiation complex cellular_component
GO:0070993 translation preinitiation complex cellular_component
GO:0031369 translation initiation factor binding molecular_function

KEGG: NA

Ensembl:

ensembl_id ENSDART00000157013

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00075257 lncRNA downstream 337182 1302937 ~ 1305423 (-) True XLOC_037554
TCONS_00075256 lncRNA downstream 461151 1177901 ~ 1181454 (-) True XLOC_037551
TCONS_00075255 lncRNA downstream 613955 1027015 ~ 1028650 (-) True XLOC_037550
TCONS_00073771 lncRNA downstream 753038 880748 ~ 889567 (-) True XLOC_037546
TCONS_00075254 lncRNA downstream 868949 772863 ~ 773656 (-) True XLOC_037542
TCONS_00075273 lncRNA upstream 281684 1931428 ~ 1933872 (-) False XLOC_037564
TCONS_00075274 lncRNA upstream 281684 1931428 ~ 1935847 (-) False XLOC_037564
TCONS_00075276 lncRNA upstream 281684 1931428 ~ 1936169 (-) False XLOC_037564
TCONS_00075275 lncRNA upstream 281684 1931428 ~ 1936169 (-) False XLOC_037564
TCONS_00075277 lncRNA upstream 501178 2150922 ~ 2171296 (-) False XLOC_037572
TCONS_00073786 mRNA downstream 2640 1629307 ~ 1639965 (-) True XLOC_037560
TCONS_00073785 mRNA downstream 2721 1589757 ~ 1639884 (-) False XLOC_037560
TCONS_00073784 mRNA downstream 38004 1589672 ~ 1604601 (-) False XLOC_037560
TCONS_00073783 mRNA downstream 142884 1485234 ~ 1499721 (-) True XLOC_037559
TCONS_00073782 mRNA downstream 158403 1464861 ~ 1484202 (-) True XLOC_037557
TCONS_00073789 mRNA upstream 43182 1692926 ~ 1703801 (-) False XLOC_037562
TCONS_00073790 mRNA upstream 43625 1693369 ~ 1703801 (-) False XLOC_037562
TCONS_00073791 mRNA upstream 43791 1693535 ~ 1702648 (-) False XLOC_037562
TCONS_00073792 mRNA upstream 45577 1695321 ~ 1703761 (-) True XLOC_037562
TCONS_00073795 mRNA upstream 287305 1937049 ~ 1939232 (-) False XLOC_037565
TCONS_00073777 other downstream 263115 1379376 ~ 1379490 (-) True XLOC_037555
TCONS_00073774 other downstream 639050 1003441 ~ 1003555 (-) True XLOC_037549
TCONS_00073793 other upstream 99175 1748919 ~ 1749036 (-) True XLOC_037563
TCONS_00073794 other upstream 281696 1931440 ~ 1934086 (-) True XLOC_037564
TCONS_00073798 other upstream 289241 1938985 ~ 1959552 (-) False XLOC_037565
TCONS_00073800 other upstream 303212 1952956 ~ 1953033 (-) False XLOC_037566
TCONS_00073801 other upstream 303277 1953021 ~ 1955923 (-) True XLOC_037566

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU100157 True 355 TUCP 0.50 2 CI01000015 1876004 ~ 1876594 (+)
grasscarp (Ctenopharyngodon idella) TU587571 True 255 lncRNA 0.43 1 CI01000353 589205 ~ 589459 (-)
rainbow trout (Oncorhynchus mykiss) TU305604 True 722 lncRNA 0.40 2 NC_048567.1 50334730 ~ 50336340 (+)
tiger barb (Puntius tetrazona) TU100157 False 1362 lncRNA 0.48 2 NC_056707.1 4572676 ~ 4575525 (+)