RNA id: TCONS_00073804


Basic Information

Item Value
RNA id TCONS_00073804
length 1410
RNA type mRNA
GC content 0.43
exon number 2
gene id XLOC_037569
representative True

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 1975818 ~ 1978090 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TCGCGAGTCCTATCCGCACGCATATGGTGCAATAGATGGGCAAAGTTTAACAGTCAAGCAGACGAATTTTCCCCCCTCTCTACGGCTAAAGCGAGCAATGACGGACTACGATGATCGCAACAACTGTGCATCTAATATGTATTTACCATACTACGTCTCTACTCCCGATTTCTCGTCGGTTTCGTCGTTTTTGCCTCAAACTACGTCGTGTCAAGTCAATTTCCCCTATTCTTCGAACATAGCGCAAGTCCAACCTGTTCGCGAAGTGACTTTTAGGGACTATGGACTGGATCATCCGAGCAAATGGCATTACAGGGGCAATTACGCTTCGTACTATTCAACGGAGGAGATAATGCACCGAGATCTCTTGCAGTCCACAAACAGAGCGGAAATGATTTTTAAGAACGATTCCATGTACAGCCATCACGCTGGTACTAACTCCTCGTGCAGTTTCTTCACCAACGTCGGCCGAAACGGGGTACTTCCACAAGGATTTGATCAGTTTTTTGAGACGGCAAACTCCGAGAAGCCCAACCCCGAGCAGTCCAAACAAAAGCCAGATACGAGTGTCCCGGGAGATGCTGCATGTAACCCGTCTACAGATAGCGCGGAGCAGACCAAACAGGACCCGACAGACACCGTGGAGGAGGAATCCTCCGTTTCAACCTGCGATGAAGAAAAGAACAGCGGCTCGAGTGCGACAAAGTCCAGAAAGAAGAGATGCCCGTATTCCAAATACCAGATCCGAGAACTTGAACGAGAATTCTTTTTCAATGTGTACATAAACAAAGAGAAACGCCTGCAGTTGTCAAGAATGCTCAGTCTTACAGACCGACAAGTGAAGATTTGGTTCCAGAACCGCAGGATGAAAGAGAAAAAGCTGAACCGAGATCGACTCCAGTATTTCACTGGAAACCCATTGTTCTGAAAGTCATGATATTGGCCGCTTCAGGAGACCAAGGCTATTCTGTCATGCTTGTGGGACATCAACCATTCGTCGGACTTATTTTCACCTCAGCCCTGTATTTGTACCACTATGCAAAATACTTGCtatatcaaacaaaaacaaaagagtcATTTTATTCGCAACTGCACTTCTGCACAAATTACCTATTGCAGTGTATCCGCAGAGATGGACATTATCAGTTTTCATAGGTACCCCGACAATCTCTTCATACTCTGTGATTGCCATTGAAATGCAGttgctttgtgtttgtttgtatttatttattatgtttttttaatttcagttctTACATTCAATACATTCAAGTAACAACTCGCACTGCGTAATAAGCAACAAACAGGTTTGGTTATATCAAATGAATTCGTTGAGGTAAAGCTGtgtatgcatttattcatttgaagCATGTATATGTATCagtgtattaaataaaaatacaggacGTA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0007275 multicellular organism development biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003677 DNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-990415-117 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in anatomical structure development and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be active in nucleus. Is expressed in several structures, including mesenchyme; neural plate; pectoral fin bud; pectoral fin field; and tail bud. Orthologous to human HOXD11 (homeobox D11).

Ensembl:

ensembl_id ENSDART00000082344

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00075276 lncRNA downstream 39649 1931428 ~ 1936169 (-) False XLOC_037564
TCONS_00075275 lncRNA downstream 39649 1931428 ~ 1936169 (-) False XLOC_037564
TCONS_00075274 lncRNA downstream 39971 1931428 ~ 1935847 (-) False XLOC_037564
TCONS_00075273 lncRNA downstream 41946 1931428 ~ 1933872 (-) False XLOC_037564
TCONS_00073787 lncRNA downstream 326074 1642605 ~ 1649744 (-) False XLOC_037561
TCONS_00075277 lncRNA upstream 172832 2150922 ~ 2171296 (-) False XLOC_037572
TCONS_00075278 lncRNA upstream 172832 2150922 ~ 2173197 (-) True XLOC_037572
TCONS_00074958 lncRNA upstream 202429 2180519 ~ 2207258 (-) True XLOC_037573
TCONS_00075279 lncRNA upstream 257803 2235893 ~ 2277636 (-) True XLOC_037574
TCONS_00074959 lncRNA upstream 404251 2382341 ~ 2389808 (-) True XLOC_037576
TCONS_00073803 mRNA downstream 5747 1967707 ~ 1970071 (-) True XLOC_037568
TCONS_00073802 mRNA downstream 10091 1964005 ~ 1965727 (-) True XLOC_037567
TCONS_00073796 mRNA downstream 15901 1937052 ~ 1959917 (-) False XLOC_037565
TCONS_00073799 mRNA downstream 24674 1948465 ~ 1951144 (-) True XLOC_037565
TCONS_00073797 mRNA downstream 25903 1937686 ~ 1949915 (-) False XLOC_037565
TCONS_00073805 mRNA upstream 3792 1981882 ~ 1984604 (-) False XLOC_037570
TCONS_00073806 mRNA upstream 3792 1981882 ~ 1986014 (-) True XLOC_037570
TCONS_00073807 mRNA upstream 8726 1986816 ~ 1990323 (-) True XLOC_037571
TCONS_00073810 mRNA upstream 582129 2560219 ~ 2573121 (-) False XLOC_037578
TCONS_00073811 mRNA upstream 582450 2560540 ~ 2572831 (-) False XLOC_037578
TCONS_00073798 other downstream 16266 1938985 ~ 1959552 (-) False XLOC_037565
TCONS_00073801 other downstream 19895 1953021 ~ 1955923 (-) True XLOC_037566
TCONS_00073800 other downstream 22785 1952956 ~ 1953033 (-) False XLOC_037566
TCONS_00073794 other downstream 41732 1931440 ~ 1934086 (-) True XLOC_037564
TCONS_00073793 other downstream 226782 1748919 ~ 1749036 (-) True XLOC_037563
TCONS_00073808 other upstream 248373 2226463 ~ 2277492 (-) False XLOC_037574
TCONS_00073809 other upstream 352771 2330861 ~ 2337303 (-) True XLOC_037575
TCONS_00073827 other upstream 1512741 3490831 ~ 3496579 (-) True XLOC_037591
TCONS_00073830 other upstream 1530228 3508318 ~ 3519711 (-) True XLOC_037592
TCONS_00073841 other upstream 2465828 4443918 ~ 4447104 (-) True XLOC_037598

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000353_00323864_00325448.mRNA True 1853 mRNA 0.39 2 CI01000353 323285 ~ 325897 (+)