RNA id: CI01000353_00323864_00325448.mRNA


Basic Information

Item Value
RNA id CI01000353_00323864_00325448.mRNA
length 1853
RNA type mRNA
GC content 0.39
exon number 2
gene id CI01000353_00323864_00325448
representative True

Chromosome Information

Item Value
chromosome id CI01000353
NCBI id null
chromosome length 2149660
location 323285 ~ 325897 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTATAAAACGTGTTTAACAATGAATCTTGCATTTTCATCCTTAAATCTCACTTTCTGGATATAGAAAGAGAATCTAAAAACATTGCAGTTTGCTTCAATAGTCAGTTTTCTTTCGGCCGTGAGACTAACTGGTTGGGAATCCTATTTAAAAAAAAGCAATTAAGTAATAATACAAATTAATGTGTTACATTTGAAATAACGTTGTGATGAAGGTCCTTCAATTAACTTTTATTTTAAACAACGTTTGACGTAGTATTTCTATGATTGTTTACTAATGCCTTGTAATACACACGGGGGAATCAACATGGGAGTTTCAAAAAATGTAGGCAACCAATGACCTGCCTCATGCGGTTACCTATGAGTCGCTCACTTAATGACTGATATTGATATATGGTAATTTTTTTTTACCGGATCACATGACACAATTACCTCAAGAATCGATCAAGATGAATTGCACGTCAGCGTACGTTTCCGATTTTTTCTTCCTCACTAGTCCTATCCACACGCATATGGTGCAATAGATGGGCAAAGTTTAACAGTCAAGCTGACGGTTTTTCCTCTCTAAGGCTAAAGCGAGCAATGACCGACTACGATGATCGCAGCAACTGTGCATCTAATATGTATTTACCATACTATGTTCCAGATTTCTCGTCAGTCTCATCGTTTTTACCGCAAACAACGTCGTGTCAAGTAAATTTCCCCTATTCTTCGAACATAGCGCAAGTCCAACCTGTTCGTGAAGTGACTTTCAGGGACTATGGACTGGATCATCCGAGCAAATGGCATTACAGGGGCAATTACGCTTCGTACTATTCAACGGAGGAGATAATGCACCGAGATCTCCTACAGTCAACAAACAGAGCGGAAATTATTTTTAAAAACGATTCCATGTATAGCCATCACGGTGGTACTAACTCCTCGTGCAATTTCTTCACCAACGTCGGCCGAAATGGGGTACTTCCACAAGGATTTGATCAGTTTTTTGAGACTGCTAACTCCGAGAAGCCCAACCCTGAGCAGTCCGAACAAAAGCCAGATACAAGTGTCCCCGGAGATGCTGCATGTAATGTGTCTTCAGATAGCGCGGAGCAGACCAAACAAGACCCTACAGAAACCATGGAGGAGGAATCCTTAATATCAACCTGCGATGAAGAGAAGAACAACGGCTCAAGTGCAACAAAGTCCAGAAAAAAGAGATGCCCATATTCGAAATACCAGATCCGAGAACTTGAACGAGAATTTTTTTTCAATGTGTACATAAACAAAGAGAAACGTCTGCAGTTGTCAAGAATGCTCAGTCTTACAGACCGACAAGTGAAGATTTGGTTCCAGAACCGAAGGATGAAAGAGAAAAAGTTGAACCGAGATCGTCTCCAGTATTTCACAGGAAACCCATTGTTCTGAAAGTCATGATACTGGCCGCTTCGGGAGACGATGGCTATTCTATTATGTCATGACTGTGGGACATCATCCATTCGTCGGACACATGACTTATTTTCACGTCAACTCTGTATTTTACTATGCAAAATACTTGCTATCAAAAATGAATTTTATCCGCAATTAAAATTCTGCACAAATTATCTACAACAATGTATCCGCAATGAGGGAAATTATCAGTTATCAGGAACATGGGTACCTCGACAATCTCTTCATACTCTGTGTTAATGCCATTGAAATGCAGTAGCTTTGTATTTGTATTTATTTATTGCATTGTTCATCGAAATACATTGAACAATACACACTTGCGTAAGCAACAAATACGTTTGGTTACATCAAATCAATACGTAATTACATTGAGGTAGAACTGTGTATGCATTTATTCGTTTGAAGCATGTAATGTATCTATGTATTAA

Function

GO:

id name namespace
GO:0043565 sequence-specific DNA binding molecular_function

KEGG:

id description
K09296 HOX_11; homeobox protein HoxC/D11

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU586949 lncRNA upstream 30999 292061 ~ 292286 (+) True G511883
TU586897 lncRNA upstream 155303 167724 ~ 167982 (+) True G511840
TU586830 lncRNA upstream 155912 69315 ~ 167373 (+) True G511776
TU586827 lncRNA upstream 259506 63548 ~ 63779 (+) True G511775
TU586806 lncRNA upstream 264661 26516 ~ 58624 (+) True G511754
TU586970 lncRNA downstream 61820 387717 ~ 388048 (+) True G511901
TU587038 lncRNA downstream 213534 539431 ~ 539661 (+) True G511959
TU587016 lncRNA downstream 232419 558316 ~ 561812 (+) True G511938
TU587020 lncRNA downstream 259418 585315 ~ 586406 (+) True G511941
TU587041 lncRNA downstream 273688 599585 ~ 599817 (+) True G511962
CI01000353_00319014_00320138.mRNA mRNA upstream 2513 318784 ~ 320772 (+) True CI01000353_00319014_00320138
CI01000353_00313956_00315335.mRNA mRNA upstream 7551 313956 ~ 315734 (+) True CI01000353_00313956_00315335
CI01000353_00266578_00266780.mRNA mRNA upstream 56418 266578 ~ 266867 (+) True CI01000353_00266578_00266780
CI01000353_00019814_00020188.mRNA mRNA upstream 302361 19814 ~ 20924 (+) True CI01000353_00019814_00020188
CI01000353_00329672_00331600.mRNA mRNA downstream 3643 329540 ~ 332088 (+) True CI01000353_00329672_00331600
CI01000353_00334136_00335255.mRNA mRNA downstream 7820 333717 ~ 336048 (+) True CI01000353_00334136_00335255
CI01000353_00347575_00348725.mRNA mRNA downstream 20936 346833 ~ 349213 (+) True CI01000353_00347575_00348725
CI01000353_00359049_00360435.mRNA mRNA downstream 32847 358744 ~ 361044 (+) True CI01000353_00359049_00360435
CI01000353_00364228_00392217.mRNA mRNA downstream 38079 363976 ~ 392805 (+) True CI01000353_00364228_00392217
TU587078 other downstream 519711 845608 ~ 864243 (+) True CI01000353_00818227_00860645
TU587885 other downstream 1099774 1425671 ~ 1425927 (+) True G512683
TU587883 other downstream 1099900 1425797 ~ 1425927 (+) False G512683
TU587884 other downstream 1099900 1425797 ~ 1425927 (+) True G512683

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00073804 True 1410 mRNA 0.43 2 NC_007120.7 1975818 ~ 1978090 (-)