RNA id: TU586806


Basic Information

Item Value
RNA id TU586806
length 659
lncRNA type read_through
GC content 0.38
exon number 2
gene id G511754
representative True

Chromosome Information

Item Value
chromosome id CI01000353
NCBI id null
chromosome length 2149660
location 26516 ~ 58624 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGATTTTTTTTTTTTTTTTTACGGTAAACTGTGATCTGAATTTATTTAATGCAATTTACAAATGCAATTGAGGTTTTTAATTGGCTTTTAACCAATTGCTATAAATTTACAGTCATACTATCAACCAGCAATTTAACCCCTGAAAACATCTGAGTGGACCCTTACAGTCTATACACACACACACACACACACACACACACACACACACTCACACACTTTCCCTATTCCGATGTACACAAAGTGCTATCAGGTTGTTTATTTCCATGGTGAAGTTCAGGTGGATGTTCCAGTAGCACCGATGGAGCTGTTGCCGTTCTCATTTAATGGGCAGGAACATGATTTGGGGGTTAAACAGTTAAACAATATTTAATTGTTACATGATTTCTTTTAACAGAGTGGACTTGATACTTTTTTTCTCCCGCAGAGACCAACAGCAGACATTTTGGTAGCAACGGCAAAAATATGTAGTCATAACTGCACTAAGTGTGTTTACATAACTAGCAGATTTTTACATGGCGAACAGAATCAGGAAAGCAACCATCAAACAGAAGAGCCCCATGGCTTCAGACAGAGCAAAACCCAGGATGGCGTAAGAAAAGAGCTGCTGCTTTAGAGATGGGTTCCTGCAACAAACAACAAAACAGCACTTTACTAGAAAT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU586827 lncRNA downstream 4924 63548 ~ 63779 (+) True G511775
TU586830 lncRNA downstream 10691 69315 ~ 167373 (+) True G511776
TU586897 lncRNA downstream 109100 167724 ~ 167982 (+) True G511840
TU586949 lncRNA downstream 233437 292061 ~ 292286 (+) True G511883
TU586970 lncRNA downstream 329093 387717 ~ 388048 (+) True G511901
CI01000353_00019814_00020188.mRNA mRNA upstream 5592 19814 ~ 20924 (+) True CI01000353_00019814_00020188
CI01000353_00266578_00266780.mRNA mRNA downstream 207954 266578 ~ 266867 (+) True CI01000353_00266578_00266780
CI01000353_00313956_00315335.mRNA mRNA downstream 255332 313956 ~ 315734 (+) True CI01000353_00313956_00315335
CI01000353_00319014_00320138.mRNA mRNA downstream 260160 318784 ~ 320772 (+) True CI01000353_00319014_00320138
CI01000353_00323864_00325448.mRNA mRNA downstream 264661 323285 ~ 325897 (+) True CI01000353_00323864_00325448
CI01000353_00329672_00331600.mRNA mRNA downstream 270916 329540 ~ 332088 (+) True CI01000353_00329672_00331600
TU586951 other downstream 239023 297647 ~ 536588 (+) True G511885
TU587078 other downstream 786984 845608 ~ 864243 (+) True CI01000353_00818227_00860645
TU587885 other downstream 1367047 1425671 ~ 1425927 (+) True G512683
TU587883 other downstream 1367173 1425797 ~ 1425927 (+) False G512683
TU587884 other downstream 1367173 1425797 ~ 1425927 (+) True G512683

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
bowfin (Amia calva) TU100015 True 3703 lncRNA 0.39 1 CM030129.1 26635982 ~ 26639684 (-)
tiger barb (Puntius tetrazona) TU100015 False 635 lncRNA 0.39 2 NC_056707.1 4217050 ~ 4219510 (+)
mexican tetra (Astyanax mexicanus) TU100015 True 466 lncRNA 0.53 2 NC_035904.1 16286228 ~ 16292019 (-)