RNA id: CI01000353_00364228_00392217.mRNA


Basic Information

Item Value
RNA id CI01000353_00364228_00392217.mRNA
length 2268
RNA type mRNA
GC content 0.42
exon number 9
gene id CI01000353_00364228_00392217
representative True

Chromosome Information

Item Value
chromosome id CI01000353
NCBI id null
chromosome length 2149660
location 363976 ~ 392805 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTATATAAATCCATAATTTAAATCATATCCAGTTATTCTCTGAGATATAGCCTAACGATATAGACTGAGCACTACTCGAGTCCCCAGGCCAGCCGACACATGGGTCGCTCTCCATTGGTCAGAGGAAAGGGTGGCTCCTCCCCTCGTTGTTGTAGGCAATATTTACAAGTTGAGCCAGAAAGTACAGTAAGTAATGAAGACAAGCGACGCGAGCTATCATTCACCGTTTAAAGTGGCGCTTTAAGAGACATAATGACCTCGTTCTTCAACTGTTACCCAGGTGGGAACTTTATGACTTTCACGGCCAAGTACTGTCAGGATCAGAGGAAGACTGCGCCCCCGTCTTACCCCGGAGGCACCCGAGAGAGACTGACGAGAAGCATTCTGGATCATCGTGTCAACACCCGATTAACCTCGGACATGCTTCAAGGTTCTTTTCAAGTGCATTATGATAGAAATGCTAGTGAGTTGGCTCACATGGGTCCCGAACTAGGTTTAAATGTTAACAGACATGCAAACAGATCGAGCAACACTGCTGGCCGCACTAATTTCACCAAACAACCCACTGAACTGGAGAAGTTTCAATTCAACAGGACGTTTAAAAAATGGGTAATTAAACATCTTATCCAGAGCGGGAGACACCTATATGAGATCCATTCTGAGTGCTTACCTGAGCACAGAAAAGATCTCTATCATCCTCACTTCCACAGCAGGGGTGAGAGACCCTTGGCAGTACTGGGAGTGGAGCAGCGCACATATCTAGTGTGTGGAGACACAGAATTGACAATGCATTTATCTTTGAATAATGTAAATGTCTGGAGAATGCAGTGGCTGAGGGGGACAGAGCGAGCATGGGACACTGGGGGTGGGGGCACTTTCCCATCTACACACTTGCCATTTTCTTTGAAATTCCATATTCCCGTACCTAAAAGAATAATTTGCACCAATGTAGAGAATAAGTCAAGGAGTGAACTACATGACAGAGTAGTGAAGACTAATGTAACTTTATTCCGATTTAAACGAAATGGTGTTGTGTTATATGAGTGGCCCTTCCCGCAGTATATTGAGCCTCATCATCACTGCCATAAAGCTCCATTACGATTGTTGTGTATGTGGTGTGAAACCGGGTGTGTTCATGTGTTTGTGCATGTGTGTATGTGGTTAAATGTTTTATTTAATTTGGTGCGTTTGGTTGTCCTGCCCAGCGGTGCCAAAACGATCATTTCTGGACTGGCAGGTTCAGACTACATAAAACACTTTGTGCCAGTCAACCCCTTTATTAGGCTGCTGATTTCCTGTATCAACTACTGTATTTCAGGCCTTCCAACACCAGCGATCATGTACACCACATGCAGATGGCTCCCTGTAGCACTGGAGAGCAAATTTTCTGCATGCAAGGGATTTTCTCTCCACAGAAGAGGCTTTGTACCACATCAAAGACGAGGAAGTTTCCAGACATTTCTCTCTGTACTGTACGGCTTTAATTCAACTGTTGCTAATGATTTATATTCAAAAACTGAAGTAGTACAAAACTCTGGCACCTTTAACCCATCAGTGCCCTTCAGTGCACTCAGTAAATTATCAGCATCCAGCCGCTTCAACATGATGATAATAATGGTGTTAATGAAGACCATCATATTGGATAAAGTGACTACCAGCCCAGATCTCCCATCCTTATAGCATAATCACCAGAGTTCAGATTCCCATGAACACATATATTCTGTCAGAGATATGCCACTTAAATCTCAATACATTGTAGAAAGGAAGTCATGTATTTCAATTAAAGAAGCTGGTCCTCTTACTGAAAAAGGCATCACATGGTCTGGCCAGGAAGCAACCAACATGGCCGCTGTGTGAACTGACTTGCTAACTTGGAAAGAAGCAAAATTAATTATTTTTGTCTTGATTTCCATTAAAAAAAACAAAAAACAAAAAAAACAAGCAAGGAACTTTATTTGCCAGTGAGATACAAAAAAACCCAACAAATGTAATAATTGGAATTGCAGATATTTTTTTTTTTTTTTTTTTTTTACTGGAAAACTGAACATGCTACTGTAATATTTCAATAATAGCCTTGAAATATATGTAATTAATGAAAACTACAAACTCACCTGCAACGTGCAACCAAGTGCGGAGAATCTCTGTGTGTGTTTGTGTGTGTGTGTGTGTTTAGTACTGCACCCAGTGTGAGGTCTGATGTTGAAAATGAAGTGTACGGGGAAGCTCTCTGGTCCACATCAGCTGCTGGCATTTTTGTAACTACATTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU586949 lncRNA upstream 71690 292061 ~ 292286 (+) True G511883
TU586897 lncRNA upstream 195994 167724 ~ 167982 (+) True G511840
TU586830 lncRNA upstream 196603 69315 ~ 167373 (+) True G511776
TU586827 lncRNA upstream 300197 63548 ~ 63779 (+) True G511775
TU586806 lncRNA upstream 305352 26516 ~ 58624 (+) True G511754
TU587038 lncRNA downstream 146626 539431 ~ 539661 (+) True G511959
TU587016 lncRNA downstream 165511 558316 ~ 561812 (+) True G511938
TU587020 lncRNA downstream 192510 585315 ~ 586406 (+) True G511941
TU587041 lncRNA downstream 206780 599585 ~ 599817 (+) True G511962
TU587042 lncRNA downstream 207411 600216 ~ 600485 (+) True G511963
CI01000353_00359049_00360435.mRNA mRNA upstream 2932 358744 ~ 361044 (+) True CI01000353_00359049_00360435
CI01000353_00347575_00348725.mRNA mRNA upstream 14763 346833 ~ 349213 (+) True CI01000353_00347575_00348725
CI01000353_00334136_00335255.mRNA mRNA upstream 27928 333717 ~ 336048 (+) True CI01000353_00334136_00335255
CI01000353_00329672_00331600.mRNA mRNA upstream 31888 329540 ~ 332088 (+) True CI01000353_00329672_00331600
CI01000353_00323864_00325448.mRNA mRNA upstream 38079 323285 ~ 325897 (+) True CI01000353_00323864_00325448
CI01000353_00550322_00556282.mRNA mRNA downstream 157517 550322 ~ 556282 (+) True CI01000353_00550322_00556282
CI01000353_00609948_00648017.mRNA mRNA downstream 216700 609505 ~ 648165 (+) True CI01000353_00609948_00648017
CI01000353_00752571_00760024.mRNA mRNA downstream 359766 752571 ~ 760304 (+) True CI01000353_00752571_00760024
CI01000353_00779223_00786536.mRNA mRNA downstream 386418 779223 ~ 786655 (+) True CI01000353_00779223_00786536
CI01000353_00818227_00860645.mRNA mRNA downstream 425422 818227 ~ 860770 (+) False CI01000353_00818227_00860645
TU587078 other downstream 452803 845608 ~ 864243 (+) True CI01000353_00818227_00860645
TU587885 other downstream 1032866 1425671 ~ 1425927 (+) True G512683
TU587883 other downstream 1032992 1425797 ~ 1425927 (+) False G512683
TU587884 other downstream 1032992 1425797 ~ 1425927 (+) True G512683

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00073794 True 1312 processed_transcript 0.41 2 NC_007120.7 1931440 ~ 1934086 (-)