RNA id: TCONS_00073811


Basic Information

Item Value
RNA id TCONS_00073811
length 2397
RNA type mRNA
GC content 0.44
exon number 8
gene id XLOC_037578
representative False

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 2560219 ~ 2573121 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCGGATTCATGTCAAAGTCTGCGGCAGTTTTGTTTATGGGGAAAGGAAAAGGAAAGTAAACAGATGCTTGTTCTCTTCGAGCAGAACACAGGTTGTCTTTGTTTCTGATACATGTATATACGCTGAGatTTCAGGATGTACCCAAGGTCTTGTGACACATTTGTAGCCTTGCCGCCGTCCACTGAGGGTCAGCGGATAATCTTCGGGAAGAACTCGGACAGACCCTGCGATGAGGTTCAGGAGGTGGTCTACTTCCCTGCAAAGGAACATGAACCAGGAAAAGTTGAGTGCACGTATATAGAAATCGAGCAGGTGGAAAAGACGTTTGCAGTGGTGCTGAGTCGCCCCGCCTGGCTGTGGGGGGCAGAGATGGGGGCAAATGAGCATCAGGTGTGCATTGGGAACGAGGCAGTGTGGGGCAGAGAGAGCGCGGATGGTGACGAGGCACTTCTGGGCATGGATCTTGTCCGGCTGGCTCTGGAGCGGGCCGACACGGCGGAGAAAGCTGTGGACGTCATCACAGATCTGCTGGAGAAATACGGCCAGGGAGGAAACTGCATGGAGGACGAGTGTGGATTCACGTACCACAACAGCTTCCTCATATCAGACCGCAAAGAAGCCTGGGTGCTGGAGACTGCTGGGAAACACTGGGCTGCGGAGAGAGTGGAGGCCGGCTACAGGAACATCTCCAATCAGTACTCCATTACTACTAAGATTGACAAGGAGCACCCGGGGATGAGGACGTACGCGAAAGAGCAGGGCTGGTGGGACGGAGAGAGCGAGTTCAGCTTTACTGATGTTTACTCGTACTCCAGCACCGCCCGCATCCAGGCGGCAGGCGGAAGATACTGTGAGGGACAGAAACTGCTGCAAAAGAGCAACGgcCACATCTCTGCACAGACGATGATGGATATTTTGCGGGATAAGGAGAGCGGGATCAACATGGAGGGGATGTTCATGAGCACAGGCAGTATGGTGTCTGTCATCCCCAAAGCTGATCATTTACCCGGAGTCCACTTCTTCACCGCCACTCCAGACCCCGAACGGTCTGTGTTTAAGCcgtttgtgtttgtgtctgaCGTGCCGCCGCTGAAACACACCAGTTCTCCATGTTTCGGGGAGGAGGATCCAGTGAAGAAGAAGCCCCGTTTCCAGAGCAAACCCAACCGCAAACACCCGCTGTTCCTGAAGCACGAGGTGGCGGCGGCCATCATCGACAGCTCTGGGGAGAGAGGACAGAAGATAGAGAAGGAGATGAGAGATCTGGAGAAGCAGAAGCTGGAGGAGATGGAGAAATATCTGACTGAGGGCGTGGAAGACTCTTCCCTGCTGGTTCATCTCTTCACAGACACCGTAGAGGAGGAGTTCAGTGTTTACAGCAGCGCATGACTATATATTCACACGCATGGCCACCATATAAACACTAATAACACACATTTACAGTTTGGAATTATGCCATTAAAATAGGTGACTCACAAGTGTTACGAACAGAATCTTATATTGTGTGAGATTTATCTTGTTTGCATGTTTGTAAAGTTAataatttcagagttgtttgtaaatgtaattaaggtaacactttagtttgttACTTTAGTTTGGTTTATTACCTGTAAATTATTATGATATTGGCTgattattagcacttataaagtatgatcttattctacatccctagtGCCGGTTTGtaatttattgagctaaaagtcatagtGAGAACTGTACCTTAAACTAAAGCACGACTAATGAATAATTACATCATTAACAAGGGATTAAATTGGATTTGTAGTTATTCTGTAATGATACAGTTgaaaacaaatgaacattttcactGGAAGGATAATAATAAGGATATGCTGTATCCCTTAATCTTAATGAAAAGACAATATCAATTGAACTCTTTTAATTCCTTAAATTGGAGTCAGACTTTGAGTTAGATTTTTTTGTAGTGCAACAAGTCACCTTATTCAgttgaaaatatttgtttttaaatattcagcaaaataaatttgcatatattatatattactctAGCTATTCCGAACTGATTTATACAGACCTGTTGACTTTACTTACAGTATTTAGGGCAAGTACATTATAACTATAATAGAATTACCCATAAATCAACAGTAATCTTTTACTTcccttaaaaaaaatgttcattctttAGAGTTATTGTTCGTTGTTAGTTCATGCTAACCAAATGGGAGCTTACTGTaaagtaaatataatttaatatatacttatataactCAAACACAACTTGAATACCAAGATTCTCCTGCTGGACTTTTCTGTGCAAATGTGAAAATTGTCGCCCTCGTGTGTCTGTGAGAGGAAACACAAGCACTGAAAATACACACTTCATAAGGGAAATTAAAATCTTAATTATATCTA

Function

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0016805 dipeptidase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-4783 Predicted to enable cysteine-type exopeptidase activity and dipeptidase activity. Predicted to act upstream of or within proteolysis. Orthologous to human SCRN3 (secernin 3).

Ensembl:

ensembl_id ENSDART00000016710

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00075280 lncRNA downstream 3233 2553874 ~ 2557307 (-) True XLOC_037577
TCONS_00074959 lncRNA downstream 170732 2382341 ~ 2389808 (-) True XLOC_037576
TCONS_00075279 lncRNA downstream 282904 2235893 ~ 2277636 (-) True XLOC_037574
TCONS_00074958 lncRNA downstream 353282 2180519 ~ 2207258 (-) True XLOC_037573
TCONS_00075278 lncRNA downstream 387343 2150922 ~ 2173197 (-) True XLOC_037572
TCONS_00075282 lncRNA upstream 204515 2777346 ~ 2780823 (-) False XLOC_037580
TCONS_00075281 lncRNA upstream 204515 2777346 ~ 2780823 (-) True XLOC_037580
TCONS_00073816 lncRNA upstream 288390 2861221 ~ 2866407 (-) False XLOC_037581
TCONS_00074960 lncRNA upstream 288390 2861221 ~ 2866454 (-) True XLOC_037581
TCONS_00075283 lncRNA upstream 557857 3130688 ~ 3132168 (-) True XLOC_037585
TCONS_00073807 mRNA downstream 570217 1986816 ~ 1990323 (-) True XLOC_037571
TCONS_00073806 mRNA downstream 574526 1981882 ~ 1986014 (-) True XLOC_037570
TCONS_00073805 mRNA downstream 575936 1981882 ~ 1984604 (-) False XLOC_037570
TCONS_00073804 mRNA downstream 582450 1975818 ~ 1978090 (-) True XLOC_037569
TCONS_00073803 mRNA downstream 590469 1967707 ~ 1970071 (-) True XLOC_037568
TCONS_00073814 mRNA upstream 19137 2591968 ~ 2594410 (-) False XLOC_037579
TCONS_00073815 mRNA upstream 19561 2592392 ~ 2594464 (-) True XLOC_037579
TCONS_00073817 mRNA upstream 306932 2879763 ~ 2892250 (-) False XLOC_037582
TCONS_00073818 mRNA upstream 312465 2885296 ~ 2892045 (-) True XLOC_037582
TCONS_00073819 mRNA upstream 323178 2896009 ~ 2945008 (-) False XLOC_037583
TCONS_00073809 other downstream 223237 2330861 ~ 2337303 (-) True XLOC_037575
TCONS_00073808 other downstream 283048 2226463 ~ 2277492 (-) False XLOC_037574
TCONS_00073798 other downstream 600988 1938985 ~ 1959552 (-) False XLOC_037565
TCONS_00073827 other upstream 918000 3490831 ~ 3496579 (-) True XLOC_037591
TCONS_00073830 other upstream 935487 3508318 ~ 3519711 (-) True XLOC_037592
TCONS_00073841 other upstream 1871087 4443918 ~ 4447104 (-) True XLOC_037598
TCONS_00073868 other upstream 3836326 6409157 ~ 6409271 (-) True XLOC_037613
TCONS_00073875 other upstream 4144846 6717677 ~ 6717801 (-) True XLOC_037618

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000350_02342610_02352568.mRNA True 2130 mRNA 0.43 8 CI01000350 2342610 ~ 2353306 (+)