XLOC_037579 (sp9)


Basic Information

Item Value
gene id XLOC_037579
gene name sp9
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 2591968 ~ 2594464 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00073814
CTAGCTGTCTAGGAAAGGCCCTGGATATGGCTACGTCTATACTTGGGGTAAGTGCGCAAATTCTGATATATTTTAATTCgacgttttttattattattattcttttatcgttgttgttgttagcATGTCACTATTGCTTGCTCGCATTCAAACCTCCAAGTAACTTTTAGATGCATTccttaaaacaaatgttttccatTCAAGAAAACGCTCTTGTTTTTTATGAAGAAAAGGGAGTTTTTTTAGAATTATAAAAAAACTTCGATAAAATATGAATAATCTGTGAAATAACGTTAATTTGTACTGCAGAAAGGTCACTTCTtggttaaaaatacaataataacaaagcaCTAAAATTAAGTATGTGTTAGCAATTATTAAATGGCTACCATAATGAATATGTACAATTATTTTCTAAAGCTTTTTAGACAActctttaataaaaatgaatctgCGCATTGAGCGCTTTATTCGATGTTTGGGTTTTATTTGGGGGAGTCATTGACACTTGTAAAACTATTTGATTCTCACACAAGCCAGCTATGTTTTATAGTCTAGTAAAGAGCACAAACTTTTCATCCACACAGGAAGAGCCGCGGTTTGGAACTACCCCTTTAGCGATGCTGGCTGCGACCTGCAACAAAATTGGCAACACCAGTCCCCTCACGACTCTCCCCGACTCCAGTGCGTTCTCCAAAGGCGGATTTCACCCCTGGAAAAGATCCTCGTCGAGCTGCAATTTGGGCTCCAGCCTGCCTGGATTCACAGTCGCCACAAGCCGAAGCACCTCCGGACTAACGACCACCACCGGCGCGGGCAACAGCGCGTTCTGCCTGGCCTCGACCTCTCCGACCTCCTCGGCTTTCTCCGCCGAATACAGCAGCTTGTTCTCCAACACAACCAGCGTTTCGTCGCAGGACTCGGGACAGTCTGCGTTCATTTCCAAAGTTCACTCTTCTGCAGACACTTTATACCCGCGCGTCGGCATGGCGCACCCGTACGAATCCTGGTACAAGTCCGGCTTTCACTCCACTATTTCGGGCGATGTGGCCAACGGGGCGTCCACGTGGTGGGACGTGCACACAAACCCGGGCTCGTGGCTCGAAGTGCAAAATCCAGCTGGCACTTTGCAAAGTTCGTTGCACTCCGGGACCCCCCAAGCCATCCACTCCCAGCTAAGCGGCTACAACCCGGACTTCTCCAGCCTCACGCACTCCGCGTTTAGCTCCACTGGCATCAGCCCCACCGCGTCTCACCTCCTGTCCACTAGTCAACACCTGTTGACACAGGAGGGGTTCAAAACTGTGATTCCCACATACACGGACGCGTCAGCCACGAATGCCATGATATCGGGCGCCAGCTCTGGCATCGGGACTTCATCCAGATCCTCCAGGAGATACTCCGGGCGGGCCACATGCGACTGCCCGAACTGCCAAGAGGCGGAGCGGCTTGGGCCTGCAGGCGCCAGCCTGCGGAGAAAAGGACTTCATAGCTGTCACATCCCGGGCTGCGGGAAAGTCTACGGGAAAACATCTCACCTCAAAGCGCACCTGAGGTGGCACACCGGTGAGAGGCCCTTTGTGTGCAACTGGCTTTTTTGCGGTAAAAGATTCACCAGATCCGACGAGCTCCAGAGGCACCTGCGCACCCACACCGGGGAGAAGAGGTTTGCGTGCCCGGTGTGCAACAAGCGCTTCATGAGGAGCGACCACTTGAGCAAACACATCAAAACACACACCGCTGGAGGCGGAGGCAAAAAGGGAAGCGACAGCGACACCGACACCAGCAACCTGGAGACCCCCAGGTCCGAGTCGCCCGAACTGATTTTGGAGGGTGTAAACCCACGGGTCACGGTCAAAGATCAGTCTCCGCACCACGAGTCCTGAGCGCGATTTTACGACAATGACCTCAAAGCGTTTGTTTCTCTCTCCCCCCTCTCTCCAAGGTGAATCAAGAAAAGGAAACGGGTCTGGAGTATGTGACATTTCTTGAGACTTTTGCATTGGAAAGAGTGAATTCAGTGCAACACTGGCTATAATTCTGCTCCGCACAGACAAACACCTCACTTTTCAGGACGATTCAAAGTCTCGGAAAGGCTCGGTATTTTAATAAGAGTGGACATTCGGTGTGGAATCAGTGCGCGGTAGAGGAACTAAATAGCCTAGCTTTGGCTGAGCTAACTGTGTACATATATCCACAAAaatatcatgttatttttttccctccTGTAAATGTTACTTATGACTGTTTTGTGGTGGATCCTGAAATTCAGGGAATTTTCTTTCCTTTCGACGCACTTTGTGGATGTCAGTATGTATGTTACACAGctatttaaaattcatttaacCTTTCCTTTACCtggctaaaaaaatatataaatgtttaattgtaTAAAGTCACGCTTATAAGGCTTTCATTTTGTAATTAAAGGGATTTAAAATCT
>TCONS_00073815
GCTTCAGCGCACTGTCCCGCAGTCACACTGGAACACTGAGTCATTGTTCTTCAGCTAGCTGTCTAGGAAAGGCCCTGGATATGGCTACGTCTATACTTGGGGAAGAGCCGCGGTTTGGAACTACCCCTTTAGCGATGCTGGCTGCGACCTGCAACAAAATTGGCAACACCAGTCCCCTCACGACTCTCCCCGACTCCAGTGCGTTCTCCAAAGGCGGATTTCACCCCTGGAAAAGATCCTCGTCGAGCTGCAATTTGGGCTCCAGCCTGCCTGGATTCACAGTCGCCACAAGCCGAAGCACCTCCGGACTAACGACCACCACCGGCGCGGGCAACAGCGCGTTCTGCCTGGCCTCGACCTCTCCGACCTCCTCGGCTTTCTCCGCCGAATACAGCAGCTTGTTCTCCAACACAACCAGCGTTTCGTCGCAGGACTCGGGACAGTCTGCGTTCATTTCCAAAGTTCACTCTTCTGCAGACACTTTATACCCGCGCGTCGGCATGGCGCACCCGTACGAATCCTGGTACAAGTCCGGCTTTCACTCCACTATTTCGGGCGATGTGGCCAACGGGGCGTCCACGTGGTGGGACGTGCACACAAACCCGGGCTCGTGGCTCGAAGTGCAAAATCCAGCTGGCACTTTGCAAAGTTCGTTGCACTCCGGGACCCCCCAAGCCATCCACTCCCAGCTAAGCGGCTACAACCCGGACTTCTCCAGCCTCACGCACTCCGCGTTTAGCTCCACTGGCATCAGCCCCACCGCGTCTCACCTCCTGTCCACTAGTCAACACCTGTTGACACAGGAGGGGTTCAAAACTGTGATTCCCACATACACGGACGCGTCAGCCACGAATGCCATGATATCGGGCGCCAGCTCTGGCATCGGGACTTCATCCAGATCCTCCAGGAGATACTCCGGGCGGGCCACATGCGACTGCCCGAACTGCCAAGAGGCGGAGCGGCTTGGGCCTGCAGGCGCCAGCCTGCGGAGAAAAGGACTTCATAGCTGTCACATCCCGGGCTGCGGGAAAGTCTACGGGAAAACATCTCACCTCAAAGCGCACCTGAGGTGGCACACCGGTGAGAGGCCCTTTGTGTGCAACTGGCTTTTTTGCGGTAAAAGATTCACCAGATCCGACGAGCTCCAGAGGCACCTGCGCACCCACACCGGGGAGAAGAGGTTTGCGTGCCCGGTGTGCAACAAGCGCTTCATGAGGAGCGACCACTTGAGCAAACACATCAAAACACACACCGCTGGAGGCGGAGGCAAAAAGGGAAGCGACAGCGACACCGACACCAGCAACCTGGAGACCCCCAGGTCCGAGTCGCCCGAACTGATTTTGGAGGGTGTAAACCCACGGGTCACGGTCAAAGATCAGTCTCCGCACCACGAGTCCTGAGCGCGATTTTACGACAATGACCTCAAAGCGTTTGTTTCTCTCTCCCCCCTCTCTCCAAGGTGAATCAAGAAAAGGAAACGGGTCTGGAGTATGTGACATTTCTTGAGACTTTTGCATTGGAAAGAGTGAATTC

Function

symbol description
sp9 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Involved in embryonic limb morphogenesis. Acts upstream of or within embryonic pectoral fin morphogenesis and positive regulation of fibroblast growth factor receptor signaling pathway. Predicted to be located in nucleus. Is expressed in several structures, including median fin fold; neural tube; pectoral fin bud; presumptive median fin fold; and tail bud. Orthologous to human SP9 (Sp9 transcription factor).

GO:

id name namespace
GO:0045743 positive regulation of fibroblast growth factor receptor signaling pathway biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0035118 embryonic pectoral fin morphogenesis biological_process
GO:0030326 embryonic limb morphogenesis biological_process
GO:0005634 nucleus cellular_component
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function

KEGG:

id description
ko03000 Transcription factors

ZFIN:

id description
ZDB-GENE-040426-2313 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Involved in embryonic limb morphogenesis. Acts upstream of or within embryonic pectoral fin morphogenesis and positive regulation of fibroblast growth factor receptor signaling pathway. Predicted to be located in nucleus. Is expressed in several structures, including median fin fold; neural tube; pectoral fin bud; presumptive median fin fold; and tail bud. Orthologous to human SP9 (Sp9 transcription factor).

Ensembl:

ensembl_id ENSDARG00000099374

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00073814 False 2443 mRNA 0.48 1 2591968 2594410
TCONS_00073815 True 1533 mRNA 0.57 2 2592392 2594464

Neighbor

gene id symbol gene type direction distance location
XLOC_037578 scrn3 coding downstream 18847 2560219 ~ 2573121 (-)
XLOC_037577 NA coding downstream 34661 2553874 ~ 2557307 (-)
XLOC_037576 NA coding downstream 202160 2382341 ~ 2389808 (-)
XLOC_037575 CU639436.1 coding downstream 254665 2330861 ~ 2337303 (-)
XLOC_037574 BX255915.1 coding downstream 314332 2226463 ~ 2277636 (-)
XLOC_037580 NA coding upstream 182882 2777346 ~ 2780823 (-)
XLOC_037581 NA coding upstream 266757 2861221 ~ 2866454 (-)
XLOC_037582 cdca7a coding upstream 285299 2879763 ~ 2892250 (-)
XLOC_037583 zak coding upstream 301545 2896009 ~ 2945008 (-)
XLOC_037584 rapgef4 coding upstream 354808 2949272 ~ 3034125 (-)
XLOC_037573 NA non-coding downstream 384710 2180519 ~ 2207258 (-)
XLOC_037585 NA non-coding upstream 536224 3130688 ~ 3132168 (-)
XLOC_037587 FP236594.1 non-coding upstream 559262 3153726 ~ 3154286 (-)
XLOC_037588 NA non-coding upstream 671104 3265568 ~ 3280451 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000350_02326331_02328418 SP9 coding CI01000350 null 2326331 ~ 2328925 (+)