RNA id: TCONS_00075281


Basic Information

Item Value
RNA id TCONS_00075281
length 3354
lncRNA type inter_gene
GC content 0.33
exon number 2
gene id XLOC_037580
representative True

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 2777346 ~ 2780823 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACCCTTGCAAAATATTGCTAAACTCCTATGAAGATTGATGCCTCCAGAGATTCGCGACGATAAGAAATAAAGGAGAGGAACTGAAAAACTGCTTCATCCCACAGTTCAGGCAGTGATGAGACAAAACAGTAAAGGGCTCAGATatttcccacaatgcactgcttCACACCCCTCTGTAGGCTGTTATTAAACGTACATAATGAGACACTCGGAGCTGCTCGTTTGGTCCTGAAACACAGTTCTACATATTAACGCAAAGCATCGGACGAAAAAAACGattcattttttgtatttttttttttaatatatgtatttatatcaaATTCAATTTGGCAAACTACAAACCGCTTCATCTCATATAAACGATTCTTGATGATTCTACAGTCCAGTTCTGTAAAAAAGTAAAAGCCGAAGGGAGCTGATCCTTAGAAAAGCTATTGTGGACGCCACAAAATCCAGATTACAACGTATATAAATatcatctcgctcaaaaaaacaaaaaaaaaaaaaaaacaaaaaaaaagacttcatTCGCCACAAATTCCTATTGAAAGATTTGATCAAGTTGACGAAGTTATGTTACATAAAATGCTTTTAATTACATGATTGTTTCATAGTTCCCCACCACTGTTACGCCCCTCCATTTTCAGGGTCTTCACCTACACCAAATAAAACTACACAACATAAACGCAACGCAGACATTTAAAGACACCTTCATGACTGCCAACAGCACGACGGCAGCTTCTCTGaacatattttttacttttacatcCTCCTTCTCATGTGGAGAACACACAATATCACGCCAAATGAGAAACTGCCTATCCATAAGTGGAAATTCTGTCGTTACTCTGTCCCTGAACAAAGTAGTTCCAATTTACAAaccggtttgagtttctttcctctgttaaacacaacaaatgccattgacttccacaggaTTTATTTCttcaacattcttcacaatatgtcgttttgtgttcaacagaaaaaactcATGAGCGCAAGTAAATAttaagtttacttttattttggtgaactgtctctttaaattgtTACATTTCCATTGATAGTGTGAGAAACATATATCAGTTATTATTCCGTCCAAACAAAGCTCATGAGGAACAGATATTAAAAATTCCTTCCAAGCAAAGCTCACAAGgagcagatatttatttattttctgtccaTTAAAAGCTCGaggaacagatatatttaatattcCGTCCAATCGAAGCTAGTGaggaacagatatatttaatattcCGTCCAATCGAAGCTCTTGagaacagatatatttaatattcCGTCCAATAAAAGCTTGTGaggaacagatatatttaatattcCGTCCAATAAAAGCTTGCGaggaacagatatatttaatattcCGTCCAATAAAACCTTGCGaggaacagatatatttaatatttcGTCCAATAAAAGCTTGCGaggaacagatatatttaatattgcTTGCAATCAAAGCTCGTAAGGAACAGATCTATTTAATATTCCGTCCAATCGAAGCCCTTGagaacagatatatttaatattcCGTCCAATAAAAGCTTGTGaggaacagatatatttaatattgcTTGCAATCAAAGCTCGTAAGGAACAGATCTATTTAATATTCCGTCCAATCGAAGCCCTTGagaacagatatatttaatattcCGTCCAATAAAAGCTTGCGaggaacagagatatatttaatatttcGTCCAATAAAAGCTTGTGaggaacagatatatttaatattgcTTGCAATCGAAGCTCGTAAGGAACAGATCTATTTAATATTCCGTCCTATCAGAGCTCGCGAGGACCAGATATATTTAATATTCTGTCCAATCAAAGCTCACGACTACATTCAAAAATGCAAAGTCAACATTCTTGGCATTAGACTCACATgaagttaaacaaaaaataggTTATATGGCAAATAGAAAACAAGTTGTGAAGAGTTGTAAGACATAAGGATTTTTACTGAATAACTACTTAAGTTTGTTTCTCACACAATTAAGTCATACTGACTTTTTTCTGGAGTTTGACAGATgtaaaaaagtcattaaaaatgGAATAATTGCCAGTATAAATTAAAGAACTACAATTATATCATCATGATAGCTTATTTTCACCgaagaatgtaaaataatgcaattCTTTAGCTCACAATTCAAACTTTTTCTCATAGTTATGCACATATGTCGCACAACAGATTTAAAACACTCACAATTGgacgttttaaaataatttgagagCTAAACCGAAGTTCAACATCTTAACGAAAGATACATTCGATTAAACAGAATAGGAAGCTTTTAAATCGCACAgtatagattattattttttgcaaattaaaattataacaatattaacATTAGTAAACAATAATAAAGCAATTACCTCACAATTGATGGCTGAGGGTCAAACTCGCAAGATACTAAAGGGataattccccccaaaaatgaaaatagacTCACTCAAGATGatataaagtttaaattaaaggTATTCTGAAAAATGCTGAGGGGGAAAAAGCAGCCAATGACGTCGATAGCaaacaaaaatactatagaagtcaaggTTTCCCCCCAACATTCATCAAAATAGAGAGAATTTGACTGtagcaaaaacaataataatactaacaataataaaGCAACTACCTTACAATTAAGGACTGAGGGACATACttgaatatatttatagatagatcacccaaaaatgctaatttactcACTCAAGTGGATCTAAATCtttatgcatttctttcttctgctgaataaAAACAAGATACTGATGAAtgttgaaaaaagcagccattgacgtCTATAGAGGAAcaaaaacactatggaagtcaatgttttccATTAGCATTAGTCAGAATAgactaaattagatttttgttttgcaaataataataataactataataataaagcaGTTACCTCACAATTCATGGCTGAGAGTCAAACATGCAAGATACTAAAGGCATAGGTTGcccaaaatgttttaattactcACTAAAGTTGATCTAAATCTTTacgaatttctttcttctgttaaataagaacaagatattgtgaagaacGTTGAAAAAAAGCAGCAATAGAGAAACAAAAACACCATAGAATTCAATAGCTGTTGTTTTATATCTTCCTTTTTCAGCAGAAGGGAAAAGcaactcataaagatttaaaaccacatgagggagagtaaataatgaggtaaatgccatttttgagtgaactaaccctttaacacaGAACTAAATATAATATGGTGGCAGAACTCCAACCTTTTACTCAATTAtgagttaaattttttttgtattgactGAAT

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00073813 lncRNA downstream 204555 2568344 ~ 2572791 (-) True XLOC_037578
TCONS_00075280 lncRNA downstream 220039 2553874 ~ 2557307 (-) True XLOC_037577
TCONS_00074959 lncRNA downstream 387538 2382341 ~ 2389808 (-) True XLOC_037576
TCONS_00075279 lncRNA downstream 499710 2235893 ~ 2277636 (-) True XLOC_037574
TCONS_00074958 lncRNA downstream 570088 2180519 ~ 2207258 (-) True XLOC_037573
TCONS_00073816 lncRNA upstream 80398 2861221 ~ 2866407 (-) False XLOC_037581
TCONS_00074960 lncRNA upstream 80398 2861221 ~ 2866454 (-) True XLOC_037581
TCONS_00075283 lncRNA upstream 349865 3130688 ~ 3132168 (-) True XLOC_037585
TCONS_00073824 lncRNA upstream 372903 3153726 ~ 3154286 (-) True XLOC_037587
TCONS_00075284 lncRNA upstream 484745 3265568 ~ 3280451 (-) True XLOC_037588
TCONS_00073815 mRNA downstream 182882 2592392 ~ 2594464 (-) True XLOC_037579
TCONS_00073814 mRNA downstream 182936 2591968 ~ 2594410 (-) False XLOC_037579
TCONS_00073810 mRNA downstream 204225 2560219 ~ 2573121 (-) False XLOC_037578
TCONS_00073817 mRNA upstream 98940 2879763 ~ 2892250 (-) False XLOC_037582
TCONS_00073818 mRNA upstream 104473 2885296 ~ 2892045 (-) True XLOC_037582
TCONS_00073819 mRNA upstream 115186 2896009 ~ 2945008 (-) False XLOC_037583
TCONS_00073820 mRNA upstream 116080 2896903 ~ 2936017 (-) True XLOC_037583
TCONS_00073821 mRNA upstream 168449 2949272 ~ 3034125 (-) False XLOC_037584
TCONS_00073809 other downstream 440043 2330861 ~ 2337303 (-) True XLOC_037575
TCONS_00073808 other downstream 499854 2226463 ~ 2277492 (-) False XLOC_037574
TCONS_00073798 other downstream 817794 1938985 ~ 1959552 (-) False XLOC_037565
TCONS_00073827 other upstream 710008 3490831 ~ 3496579 (-) True XLOC_037591
TCONS_00073830 other upstream 727495 3508318 ~ 3519711 (-) True XLOC_037592
TCONS_00073841 other upstream 1663095 4443918 ~ 4447104 (-) True XLOC_037598
TCONS_00073868 other upstream 3628334 6409157 ~ 6409271 (-) True XLOC_037613
TCONS_00073875 other upstream 3936854 6717677 ~ 6717801 (-) True XLOC_037618

Expression Profile

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