XLOC_037606 (tnfsf13b)


Basic Information

Item Value
gene id XLOC_037606
gene name tnfsf13b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 5325015 ~ 5337923 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00073855
AGAGGTGTCCACCATGCCTGCTGAAGATGTTGGTCCAGGTCGCGGTGAACGGAGAAGGTTGTCCTGGCTGTTTTTGGTGCTGGTCGCCGCTGCCATTACCTCCTCTTCGCTGTCTGTGATCTCTCTTTACCATGTGCTGGCACTGAAGGCCGAGGTGGAGGGTTTGAGGGCAGAAGTGGCTCGCAAGAGAGAAGAGCAAAGCGGGATGCTGGATGAACCTGTGAACGACGCAGAGAAACAAACCCATCGGGAGGAAGGAGGAGATAGTGTTGAGTATCTGCACCAGGCCGATATGGATATCACAACAGACCCTAGTGTCATGTCAAAAAGGAGCTTGAGTCATGTGCCAAAGAAAGCAGAACCTCAGCCCTGCTTACAGATGATGGCAGACAACAAGAAGAAAACCTTCCAAAAAGAGTTTGCTTTTGACTATTGCACAGCCATCCCATGGCAGGTGGGTCTAAAGCGCGGCTCCGCTCTGGAGGAAGAGCAGGGCACTATTTTAGTCAAAGAGGAAGGCTTCTTCTTTATCTACAGCCAGCTCTCATTTTCCCAGGTCTACTATACAGACCCCACGTTTGCCATGGGCCACATTGTGATTCGCATAAAGAAGAACGTGGTCGGCAATGAAAGTCAGCATGTGGTTCTGTTTCGCTGCATTCAGAGCATGAATCGAGTCAATCACTACAACACTTGCTATACTGGAGGCGTAGTGAAACTGGACTCTGGGGACAAACTGGATCTTCTGATACCTCGTGCTAATGCTAATATCTCTCTGGAAGGGGACGCCACGTTTTTAGGAGCAATAAAACTGGCCTGAATGTGAGACGGGGCTTTGGATCAGACTTTTAGTGAGACTGGACATGGTCAGAAAGATTGTAATTGTTCAACGCTGGAGTGTGGCAGTTTGGACATCCACCAGACTAAATACTAGAGAGCTGCTCTATTCTTTAAAATGATTATTCATtctttatattcttttttttacttgcttaaTGTTACAATTCAGTGGCACTTTATCAAATGTGCCCAAAATGAATTATTTCTTGATGTTAATGGgatggttcaccccaaaaaatgaaaatgtactcaccctcaagtggttccaaaacttttctttcttctgttaacagCCTGGGAAAAACAAGTCAGTAGTTTTCAGCATATTTCAAAGTATCtcctttttgtttttaacagagggAAGACCTTGTAAAGATTTGAATCAAgtaaagaatgagtaaatgataacagagtATTCATTTGTTGGGTGAATTAACTCTTTACACTCAGTCTTTTTAATCtcgtatttaaatatattaactcGAACTGCcatagaaattattttttttgctagatTTTCTCAATCCAGTCAGTTAGAAATCAAGTGTCCCTTTGTAAATGTGTTATACGCATGTATTTAACTCAGTATTTACTTtgatttgtaataaaaatatgattttaacaATGCACTTTGacctttatattacattttatttacctACATCAGTACAGTATGTGCGGGTATATACAGCTCGAGGTGATCATGTAATGTTAATGTTTCTACCAGCAGATGGAGACAAAAGTATGCTGTAGGACATCTAGAAGACTGGAAAAGGCAGTTTTGTGCTGCCTTTTCATTGATGAAGGTAGTTTGTTTTTGACAGCCTCTCTCTACGGTGTCTCTTACCGAGAAGTTGTCAGATCTATTATTAGAAGTGGAGAGGATTTATTTGTTTCACGTGTGACATGCTTATGAGTTTCACAGGTTTTGGTGATAACATGCACTGCCATTAGCGGACACTTGTCAGCAGGAGAGATTTCAGTAtaaaatggtatatatatatatgtatataaatatatggtatatatatttcaatggtataacaatataattattaattagtaatgtaattacATTCCTATTATGTTGTAATTACATCCAGGATGATATTTATAactttctttgtatatttcaagtactgtatttgtgtttatatgtaaataaacGCAGTACATATGTAGTTACAAACTTTTATTGTGGATGTTAGGactttgtaattacattgttgtaACAAAATTACATCTGAGATGTAATATGTAATTGCAAATGTGTCTTGTGCGTGATTACTGTTGTGACATTGTAATTACCATACCTTCACACtgtaattacattgtagttacatccaagataatatgtAGATTtgcaaatgtttctttgtatattacagtatttgGTTATCTATAGTTGTTtgtgtaaatatacacagtacacatgtaattacaaacttagtTACTATGTCAATACATCGTAAAGACACATTGATattgcattgtaattacatccaagataatataaacttaaatgtttctttgtatatttattgtacagtatttgtgtacttatacataaatatatgcagtacatatgtaattacaaacatttattttggatgcatatactgtgtaataacaatgtaatCACAATGTAGCAATAACGTagtaacaatgtaattacaatgcaatagcaatgtaattacaatgttacaaaaaattacattgttataaaaatgtcattacattgtaattacaatgtattAGCAATGTGGGtacattgttataacaatgtagtTACATTgatattacattgtaattacattttacatccaagaattttttttttactgtttgtgtATTTCAAGtgctgtatttgtgtatttataagtaAACATACACAGTGCATATGTAGTTACAAACTTAGTTTGgatgacattgtaattacattgcaaATATGCAATAGATAtgtaattaaaaacttttttatatgACGTActatgtaattacattgtaattactatttTTTAATGTAGTAATAACATTACATAACATGTAATTACtccattgttataacattgtaattacattgtaattatatcTATAATAATCAGAGATGGGGACTcgagtcacatgactcgagtcagACTTAAGTCACAAAATTTAGTACTTGAAActtgcttgacaaatatctaaaaaagacTCGACTTGAGTTAAATTAGTTAAATACACAACTGTTCTTTATAtattaagcatttaaaaacaaaacataaccgAAAGttacgcatgcgcagtattaacaGCTCATCGGTTCTCAGATCTGTCCGAAAGAATCAGTTGAATTTGCTTGACTGGATAATTCGGTTCATTAAGAAGAACAGCTTTAAATGATTTGTTCGATTCATTTAAACGATTTTGACTTCAAGAAATCATAGAgtacaaattattacattttattacagctAAATATGTATACTTTGTG
>TCONS_00073856
CATGAAGGCGAATTGGCATCAGCAGGCGTAACTAATACCTTCAGACCAGCTTCTTTCAGAGTATAAACCTTACCTCAAGGATCCTTCATCCGACTGAAGTCATGTTTTGAGAGAGGTGTCCACCATGCCTGCTGAAGATGTTGGTCCAGGTCGCGGTGAACGGAGAAGGTTGTCCTGGCTGTTTTTGGTGCTGGTCGCCGCTGCCATTACCTCCTCTTCGCTGTCTGTGATCTCTCTTTACCATGTGCTGGCACTGAAGGCCGAGGTGGAGGGTTTGAGGGCAGAAGTGGCTCGCAAGAGAGAAGAGCAAAGCGGGATGCTGGATGAACCTGTGAACGACGCAGAGAAACAAACCCATCGGGAGGAAGGAGGAGATAGTGTTGAGTATCTGCACCAGGCCGATATGGATATCACAACAGACCCTAGTGTCATGTCAAAAAGGAGCTTGAGTCATGTGCCAAAGAAAGCAGAACCTCAGCCCTGCTTACAGATGATGGCAGACAACAAGAAGAAAACCTTCCAAAAAGAGTTTGCTTTTGACTATTGCACAGCCATCCCATGGCAGGTGGGTCTAAAGCGCGGCTCCGCTCTGGAGGAAGAGCAGGGCACTATTTTAGTCAAAGAGGAAGGCTTCTTCTTTATCTACAGCCAGCTCTCATTTTCCCAGGTCTACTATACAGACCCCACGTTTGCCATGGGCCACATTGTGATTCGCATAAAGAAGAACGTGGTCGGCAATGAAAGTCAGCATGTGGTTCTGTTTCGCTGCATTCAGAGCATGAATCGAGTCAATCACTACAACACTTGCTATACTGGAGGCGTAGTGAAACTGGACTCTGGGGACAAACTGGATCTTCTGATACCTCGTGCTAATGCTAATATCTCTCTGGAAGGGGACGCCACGTTTTTAGGAGCAATAAAACTGGCCTGAATGTGAGACGGGGCTTTGGATCAGACTTTTAGTGAGACTGGACATGGTCAGAAAGATTGTAATTGTTCAACGCTGGAGTGTGGCAGTTTGGACATCCACCAGACTAAATACTAGAGAGCTGCTCTATTCTTTAAAATGATTATTCATtctttatattcttttttttacttgcttaaTGTTACAATTCAGTGGCACTTTATCAAATGTGCCCAAAATGAATTATTTCTTGATGTTAATGGgatggttcaccccaaaaaatgaaaatgtactcaccctcaagtggttccaaaacttttctttcttctgttaacagCCTGGGAAAAACAAGTCAGTAGTTTTCAGCATATTTCAAAGTATCtcctttttgtttttaacagagggAAGACCTTGTAAAGATTTGAATCAAgtaaagaatgagtaaatgataacagagtATTCATTTGTTGGGTGAATTAACTCTTTACACTCAGTCTTTTTAATCtcgtatttaaatatattaactcGAACTGCcatagaaattattttttttgctagatTTTCTCAATCCAGTCAGTTAGAAATCAAGTGTCCCTTTGTAAATGTGTTATACGCATGTATTTAACTCAGTATTTACTTtgatttgtaataaaaatatgattttaacaATG
>TCONS_00073857
AGCAGACGGGactcttttttttctCATGAAGGCGAATTGGCATCAGCAGGCGTAACTAATACCTTCAGACCAGCTTCTTTCAGAGTATAAACCTTACCTCAAGGATCCTTCATCCGACTGAAGTCATGTTTTGAGAGAGGTGTCCACCATGCCTGCTGAAGATGTTGGTCCAGGTCGCGGTGAACGGAGAAGGTTGTCCTGGCTGTTTTTGGTGCTGGTCGCCGCTGCCATTACCTCCTCTTCGCTGTCTGTGATCTCTCTTTACCATGTGCTGGCACTGAAGGCCGAGGTGGAGGGTTTGAGGGCAGAAGTGGCTCGCAAGAGAGAAGAGCAAAGCGGGATGCTGGATGAACCTGTGAACGACGCAGAGAAACAAACCCATCGGGAGGAAGGAGGAGATAGTGTTGAGTATCTGCACCAGGCCGATATGGATATCACAACAGACCCTAGTGTCATGTCAAAAAGGAGCTTGAGTCATGTGCCAAAGAAAGCAGAACCTCAGCCCTGCTTACAGATGATGGCAGACAACAAGAAGAAAACCTTCCAAAAAGAGTTTGCTTTTGACTATTGCACAGCCATCCCATGGCAGGTGGGTCTAAAGCGCGGCTCCGCTCTGGAGGAAGAGCAGGGCACTATTTTAGTCAAAGAGGAAGGCTTCTTCTTTATCTACAGCCAGCTCTCATTTTCCCAGGTCTACTATACAGACCCCACGTTTGCCATGGGCCACATTGTGATTCGCATAAAGAAGAACGTGGTCGGCAATGAAAGTCAGCATGTGGTTCTGTTTCGCTGCATTCAGAGCATGAATCGAGTCAATCACTACAACACTTGCTATACTGGAGGCGTAGTGAAACTGGACTCTGGGGACAAACTGGATCTTCTGATACCTCGTGCTAATGCTAATATCTCTCTGGAAGGGGACGCCACGTTTTTAGGAGCAATAAAACTGGCCTGAATGTGAGACGGGGCTTTGGATCAGACTTTTAGTGAGACTGGACATGGTCAGAAAGATTGTAATTGTTCAACGCTGGAGTGTGGCAGTTTGGACATCCACCAGACTAAATACTAGAGAGCTGCTCTATTCTTTAAAATGATTATTCATtctttatattcttttttttacttgcttaaTGTTACAATTCAGTGGCACTTTATCAAATGTGCCCAAAATGAATTATTTCTTGATGTTAATGGgatggttcaccccaaaaaatgaaaatgtactcaccctcaagtggttccaaaacttttctttcttctgttaacagCCTGGGAAAAACAAGTCAGTAGTTTTCAGCATATTTCAAAGTATCtcctttttgtttttaacagagggAAGACCTTGTAAAGATTTGAATCAAgtaaagaatgagtaaatgataacagagtATTCATTTGTTGGGTGAATTAACTCTTTACACTCAGTCTTTTTAATCtcgtatttaaatatattaactcGAACTGCcatagaaattattttttttgctagatTTTCTCAATCCAGTCAGTTAGAAATCAAGTGTCCCTTTGTAAATGTGTTATACGCATGTATTTAACTCAGTATTTACTTtgatttgtaataaaaatatgattttaacaATG

Function

symbol description
tnfsf13b Predicted to enable receptor ligand activity. Involved in B cell homeostasis. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in extracellular space. Orthologous to human TNFSF13B (TNF superfamily member 13b).

GO:

id name namespace
GO:0006955 immune response biological_process
GO:0030890 positive regulation of B cell proliferation biological_process
GO:0005886 plasma membrane cellular_component
GO:0005615 extracellular space cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005102 signaling receptor binding molecular_function
GO:0005164 tumor necrosis factor receptor binding molecular_function

KEGG:

id description
ko04064 NF-kappa B signaling pathway
ko04060 Cytokine-cytokine receptor interaction
ko04672 Intestinal immune network for IgA production
ko05323 Rheumatoid arthritis
ko04052 Cytokines and growth factors
ko04090 CD molecules

ZFIN:

id description
ZDB-GENE-080204-44 Predicted to enable receptor ligand activity. Involved in B cell homeostasis. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in extracellular space. Orthologous to human TNFSF13B (TNF superfamily member 13b).

Ensembl:

ensembl_id ENSDARG00000012945

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00073855 False 3313 mRNA 0.35 6 5325015 5337515
TCONS_00073856 False 1578 mRNA 0.42 7 5326861 5337696
TCONS_00073857 True 1602 mRNA 0.42 8 5326861 5337923

Neighbor

gene id symbol gene type direction distance location
XLOC_037605 ACVR1C coding downstream 6142 5271524 ~ 5318873 (-)
XLOC_037604 cytip coding downstream 61068 5253137 ~ 5263947 (-)
XLOC_037603 nr4a2a coding downstream 278700 5040985 ~ 5046315 (-)
XLOC_037602 NA coding downstream 457576 4866100 ~ 4867439 (-)
XLOC_037601 fmnl2a coding downstream 468248 4730398 ~ 4856767 (-)
XLOC_037607 abhd13 coding upstream 7313 5345236 ~ 5351017 (-)
XLOC_037608 CCKBR coding upstream 438436 5776359 ~ 5805229 (-)
XLOC_037609 GPR89B coding upstream 555685 5893608 ~ 5916755 (-)
XLOC_037610 tmtops2b coding upstream 780439 6118362 ~ 6208067 (-)
XLOC_037611 ecrg4a coding upstream 1033996 6371919 ~ 6380653 (-)
XLOC_037598 FP102171.1 non-coding downstream 877911 4443918 ~ 4447104 (-)
XLOC_037589 NA non-coding downstream 1929494 3358397 ~ 3395521 (-)
XLOC_037588 NA non-coding downstream 2044564 3265568 ~ 3280451 (-)
XLOC_037587 FP236594.1 non-coding downstream 2170729 3153726 ~ 3154286 (-)
XLOC_037613 FQ377643.1 non-coding upstream 1071234 6409157 ~ 6409271 (-)
XLOC_037614 NA non-coding upstream 1193626 6531549 ~ 6548796 (-)
XLOC_037618 BX842683.1 non-coding upstream 1379754 6717677 ~ 6717801 (-)
XLOC_037626 BX942813.1 non-coding upstream 2019896 7357819 ~ 7359484 (-)
XLOC_037631 NA non-coding upstream 2161337 7499260 ~ 7505531 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000037_03126487_03134212 TNFSF13B coding CI01000037 null 3126023 ~ 3135221 (+)