XLOC_037617 (pou3f3a)


Basic Information

Item Value
gene id XLOC_037617
gene name pou3f3a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 6658594 ~ 6661666 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00073872
CTCTCGCTCTCAGAGAGAGGAACGGAGCAGGCGAGGACAGTGAAAGCTCTTCATTGCGCGTGCATTTTATAGACTTGTGTGCGACTGATTACATCGAAGATTAACGACTGATGGACTTTGTGAAAAGAAGAAATACGAGAAGGAAAGCTCTGTAAGAAAACGCTATCCGCTGGACAAGAGAGAAGTTTTGAAAGGAGCGTCCTCTTGATAAGCCTCCACATCAAGTGAGGAGCGCGCGCGATGAAGTTCGGTGTGGGATTTGTGTAATCTTCACGTGAAGTTGATGTGaagaagtttttttttgtctcacaAACAATGACATTAAGAATGGAAAGCAATTAAAACAAACTTCCATGCACAATGTGGATTTCTACGCAGAAACTATTTCGTTGCCTTTGATTAAAGGGGATTTTGACGGATATATTTTGCCATATTTTGCTGTGTTGTCGGTGGACCAACTCAGAATACCACGCATACTTTTCCAGCTTGAATAATTCATGAAATAGTGCGTGCCTTCAAGACTTGGAAACAAAGTTACAACAATTCGGGGAGGGGGAATAATAAGTAGAAATTGTTCAAAGTGGTGAGGAGGGATGGCCACAGCGGCTTCCAACCCTTACCTGGCCAGCAGCACCATTCTCTCATCAGCCTCGCTCGTGCACTCGGAGTCCGGAGGTGGTGGCATGCAGCCGGGAAGTGGTGCAGTAACATCGGTGTCGGGGGGTTACAGAGGAGACCCCACAGTCAAGATGGTGCAGAGCGACTTCATGCAAGGAGCCATGGCGGCCAGTAACGGGGGTCACATGCTGAGCCATGCGCATCAGTGGGTCACCTCACTGCCCCACGCGGCTGCCGCAGCCGCCGCCGCCGCAGCCGCCGCAGCAGCGGAAGCCGGCTCACCTTGGAGCTCCAGCCCAGTTGGTATGGCCGGGAGCCCACAGCAACAAGACGTCAAGAGCAGTTCAAACAGGGAAGACCTACACTCGGGCACCGCTTTGCACCACAGACCCTCGCATTTAGGGGCTCACCAGTCGCACCAAAGCGCATGGGGTGGCACCACAGCCTCCCACATCTCCACCATCACCGGAGGACAGCAGCAGTCCCAGCAGTCTCTCATCTATTCCCAGCCTGGTGGTTTCACAGTCAACGGCATGTTAAACCCTCCCGGGAGTTTAGTGCACCCTGGGCTGATGCGGGGAGAGTCTCCAGAAATggatcaccatcatcatcaccaccaccatcagcagcagcacccccatcaccaccaccaccaccagcaccacGCGGGAGTGAACAGCCACGACTCGCACTCAGACGAGGACACGCCGACCTCCGACGACCTGGAGCAGTTCGCCAAACAATTTAAGCAGCGTCGGATCAAACTGGGCTTTACTCAGGCCGACGTCGGGTTAGCGCTGGGAACTCTTTACGGAAATGTTTTCTCTCAGACCACCATTTGCAGGTTCGAGGCTCTCCAGCTGAGCTTCAAGAACATGTGCAAACTTAAGCCACTGCTAAACAAGTGGCTGGAGGAGGCCGACTCGACCACGGGCAGTCCCACCAGTATCGACAAAATAGCAGCTCAAGGCAGGAAACGAAAGAAGCGCACTTCCATTGAGGTGAGCGTGAAGGGAGCCTTGGAGAGCCATTTTCTGAAATGCCCCAAACCGTCGGCGCAGGAGATCACCTCTCTGGCCGACAACCTGCAGCTGGAAAAAGAGGTGGTCCGGGTCTGGTTCTGCAACCGAAGGCAGAAGGAGAAGAGGATGACGCCGCCCGGGGTACCCCAGACGCCCGAGGACGTGTACACCCATGCCGGCAACGTGAGTGCAGACACACCGCCTCCGTCCATGGACTGCAAACGGGAGTTTTGTGGTAGATTACTTAAAAGGTGCAAGTTTGAAAGATGAACCGGACAGCAACCACAACGTCACAACTGCGAGCTCCTATGGCCAGGAGATTCTGGTGCACTGACACCGAAAACATAACCAGCCCAAAGCCAACATAAGACTTTATGGATTGAAATTGCAAAAGAACTCCCAAGGACATGGATCAATGCAgacaaacattaaatattaaacagtGGAAGAATTTACCCCAGGACACGTATCAATTTTACGCACAGGAATTATATTACTCATTTTAACAAAAACGGAATTGTCTTGTCTACTCTTGGAGTATTATGTGCAAACAAACTACACCTTTTCTATTTCATAGTATTTTTGTGGACAACACTTCTGTAAATAGCTTTTACACAGAGAAAACtctcaagaaaaaaaagagaaaaaaagattaCTCTCAAGCTGCACTTATTTTCCAATTTCAGCCGACCCCttgtaaacaccttttttgttgttgtttggctGAATAATCGTGGATATTGCCCTCTCTTCACTGCTTTTTCCAGGCAGAATTTTTTGGTGGGTTTTGATAAGTCTGTGTAAATTTGGCAATATGAATTCTCTGTgttgatttaaatgatttgcttTATATTTTTCACTAAAATCAATTTCAGATATTTTCAGGAGCAATGACAGATTTGTTGCGCGCTGTGATGATGAATTTCAACCTAGTAGCATCTCTTGTAGGCCTTCCCCCCTGCCATTTTAAATACtgattatattttatactgttagTATTACACTTGTTATTATACACAGATATTGTACACAAACATTGACGAAGCTGAAACAAACCGTTGTCAAAACGTTTCCCCGTGGTTGTTATTTAAGTTCAGTACTGACTCAGCGAGAAGTGAATGAGAATAATAAATCTGATATAGCTTTCAGATGCATCGGTGCAACTTTCTTTTTCATCCTTTCTTTCTTACATTCATTCTTTCTTGCGCAACTTGTATAAATATTAAAGATAATCACAAATGGAACACATTA
>TCONS_00073873
CTCAGAGAGAGGAACGGAGCAGGCGAGGACAGTGAAAGCTCTTCATTGCGCGTGCATTTTATAGACTTGTGTGCGACTGATTACATCGAAGATTAACGACTGATGGACTTTGTGAAAAGAAGAAATACGAGAAGGAAAGCTCTGTAAGAAAACGCTATCCGCTGGACAAGAGAGAAGTTTTGAAAGGAGCGTCCTCTTGATAAGCCTCCACATCAAGTGAGGAGCGCGCGCGATGAAGTTCGGTGTGGGATTTGTGTAATCTTCACGTGAAGTTGATGTGaagaagtttttttttgtctcacaAACAATGACATTAAGAATGGAAAGCAATTAAAACAAACTTCCATGCACAATGTGGATTTCTACGCAGAAACTATTTCGTTGCCTTTGATTAAAGGGGATTTTGACGGATATATTTTGCCATATTTTGCTGTGTTGTCGGTGGACCAACTCAGAATACCACGCATACTTTTCCAGCTTGAATAATTCATGAAATAGTGCGTGCCTTCAAGACTTGGAAACAAAGTTACAACAATTCGGGGAGGGGGAATAATAAGTAGAAATTGTTCAAAGTGGTGAGGAGGGATGGCCACAGCGGCTTCCAACCCTTACCTGGCCAGCAGCACCATTCTCTCATCAGCCTCGCTCGTGCACTCGGAGTCCGGAGGTGGTGGCATGCAGCCGGGAAGTGGTGCAGTAACATCGGTGTCGGGGGGTTACAGAGGAGACCCCACAGTCAAGATGGTGCAGAGCGACTTCATGCAAGGAGCCATGGCGGCCAGTAACGGGGGTCACATGCTGAGCCATGCGCATCAGTGGGTCACCTCACTGCCCCACGCGGCTGCCGCAGCCGCCGCCGCCGCAGCCGCCGCAGCAGCGGAAGCCGGCTCACCTTGGAGCTCCAGCCCAGTTGGTATGGCCGGGAGCCCACAGCAACAAGACGTCAAGAGCAGTTCAAACAGGGAAGACCTACACTCGGGCACCGCTTTGCACCACAGACCCTCGCATTTAGGGGCTCACCAGTCGCACCAAAGCGCATGGGGTGGCACCACAGCCTCCCACATCTCCACCATCACCGGAGGACAGCAGCAGTCCCAGCAGTCTCTCATCTATTCCCAGCCTGGTGGTTTCACAGTCAACGGCATGTTAAACCCTCCCGGGAGTTTAGTGCACCCTGGGCTGATGCGGGGAGAGTCTCCAGAAATggatcaccatcatcatcaccaccaccatcagcagcagcacccccatcaccaccaccaccaccagcaccacGCGGGAGTGAACAGCCACGACTCGCACTCAGACGAGGACACGCCGACCTCCGACGACCTGGAGCAGTTCGCCAAACAATTTAAGCAGCGTCGGATCAAACTGGGCTTTACTCAGGCCGACGTCGGGTTAGCGCTGGGAACTCTTTACGGAAATGTTTTCTCTCAGACCACCATTTGCAGGTTCGAGGCTCTCCAGCTGAGCTTCAAGAACATGTGCAAACTTAAGCCACTGCTAAACAAGTGGCTGGAGGAGGCCGACTCGACCACGGGCAGTCCCACCAGTATCGACAAAATAGCAGCTCAAGGCAGGAAACGAAAGAAGCGCACTTCCATTGAGGTGAGCGTGAAGGGAGCCTTGGAGAGCCATTTTCTGAAATGCCCCAAACCGTCGGCGCAGGAGATCACCTCTCTGGCCGACAACCTGCAGCTGGAAAAAGAGGTGGTCCGGGTCTGGTTCTGCAACCGAAGGCAGAAGGAGAAGAGGATGACGCCGCCCGGGGTACCCCAGACGCCCGAGGACGTGTACACCCATGCCGGCAACGTGAGTGCAGACACACCGCCTCCGTCCATGGACTGCAAACGTATGTTCACTGAGACGTAGAACACATTATTTGTATATACACTTCAAGTCAGCAAGATATTATAAATATGctatgtatatattttacaagAGACCTCAAAAACTGCAATCTTTAAAAAAGCTCTTCGTTTTATCCTCCAATGTCCCTAACGTTAAATGACTGTGTTTGCTCTGTGTTTCAGGGGAGTTTTGTGGTAGATTACTTAAAAGGTGCAAGTTTGAAAGATGAACCGGACAGCAACCACAACGTCACAACTGCGAGCTCCTATGGCCAGGAGATTCTGGTGCACTGACACCGAAAACATAACCAGCCCAAAGCCAACATAAGACTTTATGGATTGAAATTGCAAAAGAACTCCCAAGGACATGGATCAATGCAgacaaacattaaatattaaacagtGGAAGAATTTACCCCAGGACACGTATCAATTTTACGCACAGGAATTATATTACTCATTTTAACAAAAACGGAATTGTCTTGTCTACTCTTGGAGTATTATGTGCAAACAAACTACACCTTTTCTATTTCATAGTATTTTTGTGGACAACACTTCTGTAAATAGCTTTTACACAGAGAAAACtctcaagaaaaaaaagagaaaaaaagattaCTCTCAAGCTGCACTTATTTTCCAATTTCAGCCGACCCCttgtaaacaccttttttgttgttgtttggctGAATAATCGTGGATATTGCCCTCTCTTCACTGCTTTTTCCAGGCAGAATTTTTTGGTGGGTTTTGATAAGTCTGTGTAAATTTGGCAATATGAATTCTCTGTgttgatttaaatgatttgcttTATATTTTTCACTAAAATCAATTTCAGATATTTTCAGGAGCAATGACAGATTTGTTGCGCGCTGTGATGATGAATTTCAACCTAGTAGCATCTCTTGTAGGCCTTCCCCCCTGCCATTTTAAATACtgattatattttatactgttagTATTACACTTGTTATTATACACAGATATTGTACACAAACATTGACGAAGCTGAAACAAACCGTTGTCAAAACGTTTCCCCGTGGTTGTTATTTAAGTTCAGTACTGACTCAGCGAGAAGTGAATGAGAATAATAAATCTGATATAGCTTT
>TCONS_00073874
GCTCTCGCTCTCAGAGAGAGGAACGGAGCAGGCGAGGACAGTGAAAGCTCTTCATTGCGCGTGCATTTTATAGACTTGTGTGCGACTGATTACATCGAAGATTAACGACTGATGGACTTTGTGAAAAGAAGAAATACGAGAAGGAAAGCTCTGTAAGAAAACGCTATCCGCTGGACAAGAGAGAAGTTTTGAAAGGAGCGTCCTCTTGATAAGCCTCCACATCAAGTGAGGAGCGCGCGCGATGAAGTTCGGTGTGGGATTTGTGTAATCTTCACGTGAAGTTGATGTGaagaagtttttttttgtctcacaAACAATGACATTAAGAATGGAAAGCAATTAAAACAAACTTCCATGCACAATGTGGATTTCTACGCAGAAACTATTTCGTTGCCTTTGATTAAAGGGGATTTTGACGGATATATTTTGCCATATTTTGCTGTGTTGTCGGTGGACCAACTCAGAATACCACGCATACTTTTCCAGCTTGAATAATTCATGAAATAGTGCGTGCCTTCAAGACTTGGAAACAAAGTTACAACAATTCGGGGAGGGGGAATAATAAGTAGAAATTGTTCAAAGTGGTGAGGAGGGATGGCCACAGCGGCTTCCAACCCTTACCTGGCCAGCAGCACCATTCTCTCATCAGCCTCGCTCGTGCACTCGGAGTCCGGAGGTGGTGGCATGCAGCCGGGAAGTGGTGCAGTAACATCGGTGTCGGGGGGTTACAGAGGAGACCCCACAGTCAAGATGGTGCAGAGCGACTTCATGCAAGGAGCCATGGCGGCCAGTAACGGGGGTCACATGCTGAGCCATGCGCATCAGTGGGTCACCTCACTGCCCCACGCGGCTGCCGCAGCCGCCGCCGCCGCAGCCGCCGCAGCAGCGGAAGCCGGCTCACCTTGGAGCTCCAGCCCAGTTGGTATGGCCGGGAGCCCACAGCAACAAGACGTCAAGAGCAGTTCAAACAGGGAAGACCTACACTCGGGCACCGCTTTGCACCACAGACCCTCGCATTTAGGGGCTCACCAGTCGCACCAAAGCGCATGGGGTGGCACCACAGCCTCCCACATCTCCACCATCACCGGAGGACAGCAGCAGTCCCAGCAGTCTCTCATCTATTCCCAGCCTGGTGGTTTCACAGTCAACGGCATGTTAAACCCTCCCGGGAGTTTAGTGCACCCTGGGCTGATGCGGGGAGAGTCTCCAGAAATggatcaccatcatcatcaccaccaccatcagcagcagcacccccatcaccaccaccaccaccagcaccacGCGGGAGTGAACAGCCACGACTCGCACTCAGACGAGGACACGCCGACCTCCGACGACCTGGAGCAGTTCGCCAAACAATTTAAGCAGCGTCGGATCAAACTGGGCTTTACTCAGGCCGACGTCGGGTTAGCGCTGGGAACTCTTTACGGAAATGTTTTCTCTCAGACCACCATTTGCAGGTTCGAGGCTCTCCAGCTGAGCTTCAAGAACATGTGCAAACTTAAGCCACTGCTAAACAAGTGGCTGGAGGAGGCCGACTCGACCACGGGCAGTCCCACCAGTATCGACAAAATAGCAGCTCAAGGCAGGAAACGAAAGAAGCGCACTTCCATTGAGGTGAGCGTGAAGGGAGCCTTGGAGAGCCATTTTCTGAAATGCCCCAAACCGTCGGCGCAGGAGATCACCTCTCTGGCCGACAACCTGCAGCTGGAAAAAGAGGTGGTCCGGGTCTGGTTCTGCAACCGAAGGCAGAAGGAGAAGAGGATGACGCCGCCCGGGGTACCCCAGACGCCCGAGGACGTGTACACCCATGCCGGCAACGGGAGTTTTGTGGTAGATTACTTAAAAGGTGCAAGTTTGAAAGATGAACCGGACAGCAACCACAACGTCACAACTGCGAGCTCCTATGGCCAGGAGATTCTGGTGCACTGACACCGAAAACATAACCAGCCCAAAGCCAACATAAGACTTTATGGATTGAAATTGCAAAAGAACTCCCAAGGACATGGATCAATGCAgacaaacattaaatattaaacagtGGAAGAATTTACCCCAGGACACGTATCAATTTTACGCACAGGAATTATATTACTCATTTTAACAAAAACGGAATTGTCTTGTCTACTCTTGGAGTATTATGTGCAAACAAACTACACCTTTTCTATTTCATAGTATTTTTGTGGACAACACTTCTGTAAATAGCTTTTACACAGAGAAAACtctcaagaaaaaaaagagaaaaaaagattaCTCTCAAGCTGCACTTATTTTCCAATTTCAGCCGACCCCttgtaaacaccttttttgttgttgtttggctGAATAATCGTGGATATTGCCCTCTCTTCACTGCTTTTTCCAGGCAGAATTTTTTGGTGGGTTTTGATAAGTCTGTGTAAATTTGGCAATATGAATTCTCTGTgttgatttaaatgatttgcttTATATTTTTCACTAAAATCAATTTCAGATATTTTCAGGAGCAATGACAGATTTGTTGCGCGCTGTGATGATGAATTTCAACCTAGTAGCATCTCTTGTAGGCCTTCCCCCCTGCCATTTTAAATACtgattatattttatactgttagTATTACACTTGTTATTATACACAGATATTGTACACAAACATTGACGAAGCTGAAACAAACCGTTGTCAAAACGTTTCCCCGTGGTTGTTATTTAAGTTCAGTACTGACTCAGCGAGAAGTGAATGAGAATAATAAATCTGATATAGCTTT

Function

symbol description
pou3f3a Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within brain development and regulation of transcription, DNA-templated. Predicted to be located in nucleus. Is expressed in central nervous system; neural tube; neurons; pharyngeal arch; and pronephric duct. Orthologous to human POU3F3 (POU class 3 homeobox 3).

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0030154 cell differentiation biological_process
GO:0007275 multicellular organism development biological_process
GO:0045944 positive regulation of transcription by RNA polymerase II biological_process
GO:0007420 brain development biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0001228 DNA-binding transcription activator activity, RNA polymerase II-specific molecular_function
GO:0003677 DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-980526-220 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within brain development and regulation of transcription, DNA-templated. Predicted to be located in nucleus. Is expressed in central nervous system; neural tube; neurons; pharyngeal arch; and pronephric duct. Orthologous to human POU3F3 (POU class 3 homeobox 3).

Ensembl:

ensembl_id ENSDARG00000042032

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00073872 False 2891 mRNA 0.47 2 6658594 6661665
TCONS_00073873 False 2959 mRNA 0.47 1 6658699 6661657
TCONS_00073874 True 2747 mRNA 0.48 2 6658699 6661666

Neighbor

gene id symbol gene type direction distance location
XLOC_037616 GPR45 coding downstream 33931 6623536 ~ 6624663 (-)
XLOC_037615 C9H2orf49 coding downstream 40527 6607514 ~ 6618067 (-)
XLOC_037614 NA coding downstream 109798 6531549 ~ 6548796 (-)
XLOC_037612 nck2a coding downstream 156103 6393368 ~ 6502491 (-)
XLOC_037613 FQ377643.1 coding downstream 249323 6409157 ~ 6409271 (-)
XLOC_037618 BX842683.1 coding upstream 56011 6717677 ~ 6717801 (-)
XLOC_037619 tmem182a coding upstream 253945 6915611 ~ 6927587 (-)
XLOC_037620 slc9a2 coding upstream 301373 6963039 ~ 6991650 (-)
XLOC_037621 coa5 coding upstream 419911 7081577 ~ 7089303 (-)
XLOC_037622 mgat4a coding upstream 429362 7091028 ~ 7213772 (-)
XLOC_037602 NA non-coding downstream 1791155 4866100 ~ 4867439 (-)
XLOC_037598 FP102171.1 non-coding downstream 2211490 4443918 ~ 4447104 (-)
XLOC_037589 NA non-coding downstream 3263073 3358397 ~ 3395521 (-)
XLOC_037626 BX942813.1 non-coding upstream 696153 7357819 ~ 7359484 (-)
XLOC_037631 NA non-coding upstream 837594 7499260 ~ 7505531 (-)
XLOC_037636 NA non-coding upstream 1280103 7941769 ~ 7942597 (-)
XLOC_037637 NA non-coding upstream 1498675 8160341 ~ 8163995 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000037_02248789_02250329 POU3F3 coding CI01000037 null 2248594 ~ 2251121 (+)