CI01000037_02248789_02250329 (POU3F3)


Basic Information

Item Value
gene id CI01000037_02248789_02250329
gene name POU3F3
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000037
NCBI id null
chromosome length 4612320
location 2248594 ~ 2251121 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000037_02248789_02250329.mRNA
TGATAAAAGGAGGTTTTGACGGATATATTTTTGCCATCTTTTACTGTGTTGTCGGTGGACCAAATCAAATACCGCGCATATTTTTCCAGCTTGAATAATTCATGAAATAGTGCGTGCCTTCGAGGCTTGGAAAAAAGTTACGACAATACGGGGAGGGGGAATAATAAGTAGAATTGTTCAAAGTGGTGAGGGGGGATGGCCACAGCGGCTTCCAATCCTTACCTGGCCAGCAATACCATTCTCTCATCAGCCTCGATCGTGCACTCGGAGTCCGGAGGTGGTGGCATGCAGCCGGGAAGTGGTGTCGTAACATCGGTGTCGGGAGGTTACAGAGGAGACCCCACGGTCAAGATGGTGCAGAGCGACTTCATGCAAGGAGCCATGACGGCCAGTAACGGGGGGCACATGCTGAGCCATGCCCATCAGTTCGAGGCTCTCCAGCTGAGCTTTAAAAACATGTGCAAACTCAAGCCACTGCTGAACAAGTGGCTGGAAGAGGCCGACTCGACCACGGGCAGCCCCACCAGCATTGACAAAATAGCAGCTCAAGGCAGGAAACGAAAGAAGCGCACCTCCATCGAGGTGAGCGTGAAGGGAGCCTTGGAAAGCCATTTTTTGAAATGCCCAAAACCGTCAGCGCAGGAGATTTCCTCTCTGGCGGACAACCTCCAGCTGGAAAAGGAGGTGGTTCGGGTTTGGTTCTGCAACCGAAGGCAGAAGGAGAAGAGGATGACGCCGCCCGGGGTTCCTCAGACGCCCGAGGACGTGTACACCCATGCCGGCAACGGGAGTTTTGTGGTAGATTACTTAAAAGGTGCAAGTTTGAAAGATGAACCGGACAGCAACCACAACGTGACAACTACGAGCTCCTATGGCCAGGAGATTCTGGTGCACTGACACCGAAATCATAACCAGCCCAAAGCCAACATAGACTTTATGGATTGAAATTACAAAAGAACTCCCAAGGACATGGATCAATGCAGACAAACATTAAATATTAAACAGTGGAAGAATTTACCCCACGTATCAATTTTACGCACAGGAATTATATTACTCATTTTAACAAAACGGAATTGTCTTGTCTACTCTTGGAGCATTATGTGCAACAAACTACACCTTTTCTAATTCATAGTATTTTTGTGGACCACACTTCTGTGAATAGCTTTTACACAGAGAAAACTCTTAAGAAAAAAAATTAAAGAAAAAAAAAAAGATTGATTACTCTCAAGCTGCACTTATTTTCCAATTTCAGCCGACCCCTTGTAAACACTTTTTGTTGTTTGGCTGAATCATCGTGGATATTGCCCTCTCTTCACTGCTTTTTCCAGGCAGAATTTTTTGGTGGGTTTTGATAACGAGTCTGTGTAAATTTGGCAATATGAATTCTCTGTGTTGATTTAAATGATTTGCTTTATATTTTTCACTAAATCGATTTCAAATATTTTCAGGAGCAATGACAGATTTGTTGCGCGCTGTGATGACTTTCAACCTAGTAGCATCTCTTGTAGGCCTTCCCCCTGCCATTTTAAATATTGATTATATTTTATACTGTTAGTATTACACTTGTTATTATATACAGATATTGTACACAGACACATTGACGAAGCTGAAACAAACCGTTGTCAAACCGTTTCCCCCGTGGTTGTTATTTAAGTTCAGTACTGACTCAGCGAGAAGTGAATGAGAACA

Function

symbol description
pou3f3 Enables protein homodimerization activity. Involved in positive regulation of transcription, DNA-templated. Located in nucleoplasm.

GO: NA

KEGG:

id description
K09365 POU3F, OTF; POU domain transcription factor, class 3

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000037_02248789_02250329.mRNA True 1689 mRNA 0.44 3 2248594 2251121

Neighbor

gene id symbol gene type direction distance location
CI01000037_02087502_02094770 NA coding upstream 153526 2087502 ~ 2095068 (+)
CI01000037_02065346_02075634 NA coding upstream 172310 2065276 ~ 2076284 (+)
CI01000037_01965864_01966433 COA5, CB064 coding upstream 282159 1965603 ~ 1966435 (+)
CI01000037_01925100_01960498 MGAT4A coding upstream 287872 1925100 ~ 1960722 (+)
CI01000037_01890963_01896442 CREG2 coding upstream 352150 1890963 ~ 1896444 (+)
CI01000037_02279319_02280446 GPR45 coding downstream 28037 2279158 ~ 2280756 (+)
CI01000037_02282458_02287205 NA coding downstream 30226 2281347 ~ 2287285 (+)
CI01000037_02334480_02338932 NA coding downstream 80343 2331464 ~ 2338989 (+)
CI01000037_02378066_02392175 NCK2A, NCK2 coding downstream 126945 2378066 ~ 2392871 (+)
CI01000037_02405252_02406221 NA coding downstream 153662 2404783 ~ 2406437 (+)
G175693 NA non-coding upstream 105331 2142951 ~ 2143263 (+)
G175689 NA non-coding upstream 108782 2139589 ~ 2139812 (+)
G175674 NA non-coding upstream 174954 2073428 ~ 2073640 (+)
G175670 NA non-coding upstream 184058 2064172 ~ 2064536 (+)
G175641 NA non-coding upstream 188515 2031546 ~ 2060079 (+)
G175630 NA non-coding downstream 47206 2298327 ~ 2300350 (+)
G175767 NA non-coding downstream 51616 2302737 ~ 2303537 (+)
G175769 NA non-coding downstream 61086 2312207 ~ 2312711 (+)
G175777 NA non-coding downstream 161780 2412901 ~ 2413354 (+)
G175858 NA non-coding downstream 355257 2606378 ~ 2609995 (+)
G174949 NA other upstream 634320 1613876 ~ 1614274 (+)
CI01000037_00987906_00988350 NA other upstream 1258835 987859 ~ 989246 (+)
CI01000037_00228809_00230442 NA other upstream 2018198 228809 ~ 230730 (+)
G176346 NA other downstream 588639 2839760 ~ 2840053 (+)
G176377 NA other downstream 725741 2976862 ~ 3087968 (+)
CI01000037_04213179_04218057 NA other downstream 1962162 4212907 ~ 4218305 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_037617 pou3f3a coding NC_007120.7 CM002893.2 6658594 ~ 6661666 (-)