RNA id: TCONS_00073874


Basic Information

Item Value
RNA id TCONS_00073874
length 2747
RNA type mRNA
GC content 0.48
exon number 2
gene id XLOC_037617
representative True

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 6658594 ~ 6661666 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCTCTCGCTCTCAGAGAGAGGAACGGAGCAGGCGAGGACAGTGAAAGCTCTTCATTGCGCGTGCATTTTATAGACTTGTGTGCGACTGATTACATCGAAGATTAACGACTGATGGACTTTGTGAAAAGAAGAAATACGAGAAGGAAAGCTCTGTAAGAAAACGCTATCCGCTGGACAAGAGAGAAGTTTTGAAAGGAGCGTCCTCTTGATAAGCCTCCACATCAAGTGAGGAGCGCGCGCGATGAAGTTCGGTGTGGGATTTGTGTAATCTTCACGTGAAGTTGATGTGaagaagtttttttttgtctcacaAACAATGACATTAAGAATGGAAAGCAATTAAAACAAACTTCCATGCACAATGTGGATTTCTACGCAGAAACTATTTCGTTGCCTTTGATTAAAGGGGATTTTGACGGATATATTTTGCCATATTTTGCTGTGTTGTCGGTGGACCAACTCAGAATACCACGCATACTTTTCCAGCTTGAATAATTCATGAAATAGTGCGTGCCTTCAAGACTTGGAAACAAAGTTACAACAATTCGGGGAGGGGGAATAATAAGTAGAAATTGTTCAAAGTGGTGAGGAGGGATGGCCACAGCGGCTTCCAACCCTTACCTGGCCAGCAGCACCATTCTCTCATCAGCCTCGCTCGTGCACTCGGAGTCCGGAGGTGGTGGCATGCAGCCGGGAAGTGGTGCAGTAACATCGGTGTCGGGGGGTTACAGAGGAGACCCCACAGTCAAGATGGTGCAGAGCGACTTCATGCAAGGAGCCATGGCGGCCAGTAACGGGGGTCACATGCTGAGCCATGCGCATCAGTGGGTCACCTCACTGCCCCACGCGGCTGCCGCAGCCGCCGCCGCCGCAGCCGCCGCAGCAGCGGAAGCCGGCTCACCTTGGAGCTCCAGCCCAGTTGGTATGGCCGGGAGCCCACAGCAACAAGACGTCAAGAGCAGTTCAAACAGGGAAGACCTACACTCGGGCACCGCTTTGCACCACAGACCCTCGCATTTAGGGGCTCACCAGTCGCACCAAAGCGCATGGGGTGGCACCACAGCCTCCCACATCTCCACCATCACCGGAGGACAGCAGCAGTCCCAGCAGTCTCTCATCTATTCCCAGCCTGGTGGTTTCACAGTCAACGGCATGTTAAACCCTCCCGGGAGTTTAGTGCACCCTGGGCTGATGCGGGGAGAGTCTCCAGAAATggatcaccatcatcatcaccaccaccatcagcagcagcacccccatcaccaccaccaccaccagcaccacGCGGGAGTGAACAGCCACGACTCGCACTCAGACGAGGACACGCCGACCTCCGACGACCTGGAGCAGTTCGCCAAACAATTTAAGCAGCGTCGGATCAAACTGGGCTTTACTCAGGCCGACGTCGGGTTAGCGCTGGGAACTCTTTACGGAAATGTTTTCTCTCAGACCACCATTTGCAGGTTCGAGGCTCTCCAGCTGAGCTTCAAGAACATGTGCAAACTTAAGCCACTGCTAAACAAGTGGCTGGAGGAGGCCGACTCGACCACGGGCAGTCCCACCAGTATCGACAAAATAGCAGCTCAAGGCAGGAAACGAAAGAAGCGCACTTCCATTGAGGTGAGCGTGAAGGGAGCCTTGGAGAGCCATTTTCTGAAATGCCCCAAACCGTCGGCGCAGGAGATCACCTCTCTGGCCGACAACCTGCAGCTGGAAAAAGAGGTGGTCCGGGTCTGGTTCTGCAACCGAAGGCAGAAGGAGAAGAGGATGACGCCGCCCGGGGTACCCCAGACGCCCGAGGACGTGTACACCCATGCCGGCAACGGGAGTTTTGTGGTAGATTACTTAAAAGGTGCAAGTTTGAAAGATGAACCGGACAGCAACCACAACGTCACAACTGCGAGCTCCTATGGCCAGGAGATTCTGGTGCACTGACACCGAAAACATAACCAGCCCAAAGCCAACATAAGACTTTATGGATTGAAATTGCAAAAGAACTCCCAAGGACATGGATCAATGCAgacaaacattaaatattaaacagtGGAAGAATTTACCCCAGGACACGTATCAATTTTACGCACAGGAATTATATTACTCATTTTAACAAAAACGGAATTGTCTTGTCTACTCTTGGAGTATTATGTGCAAACAAACTACACCTTTTCTATTTCATAGTATTTTTGTGGACAACACTTCTGTAAATAGCTTTTACACAGAGAAAACtctcaagaaaaaaaagagaaaaaaagattaCTCTCAAGCTGCACTTATTTTCCAATTTCAGCCGACCCCttgtaaacaccttttttgttgttgtttggctGAATAATCGTGGATATTGCCCTCTCTTCACTGCTTTTTCCAGGCAGAATTTTTTGGTGGGTTTTGATAAGTCTGTGTAAATTTGGCAATATGAATTCTCTGTgttgatttaaatgatttgcttTATATTTTTCACTAAAATCAATTTCAGATATTTTCAGGAGCAATGACAGATTTGTTGCGCGCTGTGATGATGAATTTCAACCTAGTAGCATCTCTTGTAGGCCTTCCCCCCTGCCATTTTAAATACtgattatattttatactgttagTATTACACTTGTTATTATACACAGATATTGTACACAAACATTGACGAAGCTGAAACAAACCGTTGTCAAAACGTTTCCCCGTGGTTGTTATTTAAGTTCAGTACTGACTCAGCGAGAAGTGAATGAGAATAATAAATCTGATATAGCTTT

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0030154 cell differentiation biological_process
GO:0007275 multicellular organism development biological_process
GO:0045944 positive regulation of transcription by RNA polymerase II biological_process
GO:0007420 brain development biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0001228 DNA-binding transcription activator activity, RNA polymerase II-specific molecular_function
GO:0003677 DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-980526-220 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within brain development and regulation of transcription, DNA-templated. Predicted to be located in nucleus. Is expressed in central nervous system; neural tube; neurons; pharyngeal arch; and pronephric duct. Orthologous to human POU3F3 (POU class 3 homeobox 3).

Ensembl:

ensembl_id ENSDART00000061593

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00074961 lncRNA downstream 109903 6531549 ~ 6548796 (-) True XLOC_037614
TCONS_00073869 lncRNA downstream 156606 6414784 ~ 6502093 (-) True XLOC_037612
TCONS_00075290 lncRNA downstream 1612710 5044975 ~ 5045989 (-) True XLOC_037603
TCONS_00073852 lncRNA downstream 1614611 5043087 ~ 5044088 (-) False XLOC_037603
TCONS_00075289 lncRNA downstream 1791260 4866100 ~ 4867439 (-) True XLOC_037602
TCONS_00073887 lncRNA upstream 696153 7357819 ~ 7359484 (-) True XLOC_037626
TCONS_00075291 lncRNA upstream 837594 7499260 ~ 7505531 (-) True XLOC_037631
TCONS_00075292 lncRNA upstream 1280103 7941769 ~ 7942597 (-) True XLOC_037636
TCONS_00075293 lncRNA upstream 1498675 8160341 ~ 8163995 (-) True XLOC_037637
TCONS_00075294 lncRNA upstream 1622489 8284155 ~ 8286208 (-) True XLOC_037638
TCONS_00073871 mRNA downstream 34036 6623536 ~ 6624663 (-) True XLOC_037616
TCONS_00073870 mRNA downstream 40632 6607514 ~ 6618067 (-) True XLOC_037615
TCONS_00073867 mRNA downstream 156208 6393368 ~ 6502491 (-) False XLOC_037612
TCONS_00073866 mRNA downstream 278046 6371926 ~ 6380653 (-) True XLOC_037611
TCONS_00073865 mRNA downstream 286164 6371919 ~ 6372535 (-) False XLOC_037611
TCONS_00073876 mRNA upstream 253945 6915611 ~ 6927587 (-) True XLOC_037619
TCONS_00073877 mRNA upstream 301373 6963039 ~ 6991650 (-) True XLOC_037620
TCONS_00073878 mRNA upstream 419911 7081577 ~ 7089303 (-) True XLOC_037621
TCONS_00073880 mRNA upstream 429362 7091028 ~ 7213772 (-) False XLOC_037622
TCONS_00073879 mRNA upstream 429362 7091028 ~ 7213772 (-) False XLOC_037622
TCONS_00073868 other downstream 249428 6409157 ~ 6409271 (-) True XLOC_037613
TCONS_00073841 other downstream 2211595 4443918 ~ 4447104 (-) True XLOC_037598
TCONS_00073830 other downstream 3138988 3508318 ~ 3519711 (-) True XLOC_037592
TCONS_00073827 other downstream 3162120 3490831 ~ 3496579 (-) True XLOC_037591
TCONS_00073809 other downstream 4321396 2330861 ~ 2337303 (-) True XLOC_037575
TCONS_00073875 other upstream 56011 6717677 ~ 6717801 (-) True XLOC_037618
TCONS_00073897 other upstream 860769 7522435 ~ 7539023 (-) True XLOC_037632
TCONS_00073901 other upstream 980094 7641760 ~ 7655301 (-) True XLOC_037633
TCONS_00073935 other upstream 3081893 9743559 ~ 9805319 (-) False XLOC_037657
TCONS_00073936 other upstream 3108669 9770335 ~ 9805319 (-) True XLOC_037657

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000037_02248789_02250329.mRNA True 1689 mRNA 0.44 3 CI01000037 2248594 ~ 2251121 (+)