RNA id: TCONS_00073880


Basic Information

Item Value
RNA id TCONS_00073880
length 7325
RNA type mRNA
GC content 0.43
exon number 15
gene id XLOC_037622
representative False

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 7091028 ~ 7213772 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CAGTTCTGTGTGGGCGATCGTAGCTCATTGTGGGTGTGGTGTTCAACAAAGGTTGATTGAGAGATCGCATCACCGTTGAAGCTTCTGGCAGGACGCGGTGTCTCATATAGCATTTAACGAACATCGCAAATCGTGGTTTGGCTTGTTTTGTACTGGATATTTCTTATGAGATCGGGTCGGGACGTTTCGCTGAACAACAACAGGGTAGAAGGTAAGAAGTGTTGAACTTGGGGCTGTTGATCATGCCTGTCTGACATATTTCAGGGTCCTCCGACAGGTAGTCAActcttgtttattttacagaccccaattgtgtgcgtgtgtgttttcaatttgtttaatatattgttttaacaaATCACCCCTCCTCCGTTCTACATTtcctctgcagtatttgtgagtgTCCCTTAGTGATTCATTTTCTAAGTAATAAGGTTACATGCATATTTAAACAGCGATCTGTCTAACTCCGTCAGTCTCTGCGGTCTGCACAATAAAAGCTGAGCAATACCTGCTGCTCTATTACTGTTTCATTAATTTCATGTCTCTCCCAGTAACGGCAGGCATGAGGATTGCACGTCTTTCTCTTGAAATGCATCAGTTCCGCTGGGCTGCCTCGTGACTCCAGCAGCGAccgagaggaggaggaggaggtggtggtggaggaggaggactGGACCGCGGTGAAGACAACAGATGATCCGGGCCCCCGTCACCTCCTGTCCGCTCCTCTGAAGCGCGTCTGCTCGCCGGGATCAGGAGCACTAGAGGCGGCCGCACGGAGAGGCGTTGAAATGAGATGAGGCTCAGACATGGAACTGTTGCCACTGCGATTGTTTTCTTCACATCGTTTCTCAGTCTGTCCTGGTACACGGCTTGGCAAAATGGCAAAGAAAAGTTGGTAGCGTATCAGAGGGAGTTTCATGCCCTGCGGGAGCGTCTGCGGGTGGCGGAGCACCGAACACTCCAGCGCTCCTCTGAACTCAATGCCATCCTGGAGCAGTTCAGACGAGCCATCTCAGAGACCAACGGCAGCAAAGATGCCCTCTCCAACTTCTCAGACGAGACTCAGAAGCTGTTGAAGGAGTTGGCTCACAGGAAGCCCCTTCAGGTGCCAAATATCTACCACCACCTGCCTCACCTGCTCAACAATGAAGGCAGTCTGCACCCAGCCGTACAGGTGGGACAGGGGCGAACCGGAGTTTCCATGGTGATGGGCATCCCCACAGTGAAGCGGAAAGTGAAGTCATACCTGTCAGAGACGCTTCATTCGCTCATCGATAAGCTGTCGGCGGAGGAGAAGCTGGATTGCGTCATCATAGTGTTTGTAGGAGAGACGGACGTGGATTACGTAAACAGTGTGGTTGCAGGCCTTGAAAAAGAGTTCTACACTGAGCTGAATTCTGGGTTACTGGAGGTCATTTCCCCACCTGCCAGCTACTATCCGGACTTAAGCAGCTTGAAAGAGACCTTCGGTGACTCAAAGGAGAGGGTGAAATGGAGGACCAAGCAGAACTTGGACTATTCTTTTCTTATGATGTATGCTGTCAACAAAGGGGTCTATTATGTCCAGTTAGAGGACGACATCGTTGCCAAGCCCAACTATTTTGCCACCATGAAAAACTTTGCTCTGCAACTTGCCACAGAGGACTGGATGATCCTCGAGTTTTCACAGCTGGGCTTCATCGgtAAGATGTTCCAAGCCCCAGATCTAAATCTCATCGTGGAGTTTATCTTCATGTTTTATAAAGAGAAGCCCATCGATTGGCTGCTGGATCACATACTCTGGGTCAAAGTGTGCAACCCAGAGAAAGATGCCAAACACTGTGAGAGACAGAAGTCGAGTCTGCGCATTCGTTTCAGGCCCTCTTTGTTTCAGCACGTAGGCCTGCACTCCTCTCTGGCTGGGAAAATACAGAAACTCACGGATAAAGATTTCCTGAAGCCTCTGCTGCACAAGATTCATGTCAACCCGCCGGCGGAGGTATCCACGTCTCTTAAAGTGTACCAAGGCCATACGCTGGAAAAAACCTACATGGGCGAGGATTTCTTCTGGGCCATTACTCCAATGGCAGGAGACTATGTGCTGTTCAAGTTTGACCGGCCCGTCCACATTGACAGGTTCCTTTTTCGCAGTGGAAACCAGGAGCACCCAGGAGACAAAATCGAGAACACTACTGTCGAGATCCTGCCCTTTTCGGACGGCGAGTTGAAGACCAAAGAGAAATACAAAAGAACAGAGGATCGCTTTTACAGACTCGCTCAGTTTGAGAATGGAGTGGCTGAGGGGACTGTGGAAGCTGTTTTTAACCCTGTGGTGGCTGTTCGTCTGTCCGTCCAGAAAGACTCTGCTGTCTGGGCCATTATTAGCGAGATCCATATCAAGAGAATACCTGGATAACAGCCTGAAGGCCTCTGGTCATCTGGATGGAGACTTGCTGCTTAAATCCACAGTGACTTTTATCAGAGTGTGTTGAGGATCCTGGATTCTTGGTCTTCACCGCTTCACTTTTTCCTCCGGTAGCTTTGTCACTCTCTCCTTTCCCCTTCTACTCTTCCCTGAGTTGGGTGTGAATGTGACTACTACTGTACAGAaaagaagtcttttttttttgttccagacACTGAATTAGTGTCGTGAAGAATTTGCAATCATCGACGCTCTCATGAAAGTTTGAATTTAGCGTTGAGTGCTGGAGGACGAGTGGATGTGCCCTACTGATGCAGAACTGAAACTGACCTCAATCTCCACGGCTGGGTTTCAGCCGAAAGGTGAACGACTGGGATGATTTTTAGATTTTAGGTTATTGATATTTGACACTCTATGAAGAACATTTCAGAGAGAGAGTAATCGTTGACTGCTTTGCCAAACTTTAAAAAGGCGTTTCTAGAAAACAAACATCATATCTTCGGCCACCAGGAGTGGCTTTTCTTCCTTCGTGTGGGTTTAATGTCTACCAATCAGTCATGGCTTTCGATCTGAAGGTTTTTAATTGCTGTTCTCATTTTTTGACGATCTATGAAGgtgaattaatttatttgaaacaagtcttttaatttgtaaatgcttttattttatattgattggATGTGGCAGAGAATTTATTGAAGTGAAGATggttgttgtttgtgtgtttgtgaaggGGGTGCCGAACGTCCACTTCTGTGCCTTAACCTCCAGCGACCCCTAGAGGGCCTGGTGAAGGACTGCCTCGCGCCCCTGTGTCAAAACGCTTAAATCATACTATTGGACAAATCTCCGTATGCTTGATTTAAGTAGGATCTTGAAGTTTAGAGCATGGCATGTTCGTGTTTATGTTCCAGAATCTTGTCGTTTTCGTTTTTCCGTTGAGCATTTCCATCTCGAATAGTCCACTTTCATCATGCCTGTCAGGAAATGTGCTCCTTTCTATGCTGTATCACGAGAATCTGAATGTTCAGCGAGTCTTGATTAAGtccagatggaatctgcagatTATGAGGGGTAAAAAGTGATTAATAAAGAAGATGTGGGTGATGTGCTTGGCTTTAACAGTAGCTGAAAGCACAATCACAAGCTGCTAAAGGAGCATGGTGATGGGGAAAAAATAGACTGCATTTCAAAGCATTTGAAAATGTTTCCATTTAGCTTTCTCTCAAATTTATTGTGTCTCATCTCAGATAAAACTACGCAACAGTACTTTAAAGAAATTGCAACACATTTCTTTGAGAAATATGATACGTTACAGACGAATTCAAAGTAGATTGAATTACATTTGTGAACACCATTCACAATACACCATTTTTGGGGGGAACAGATGAACATGCAACGTTTATTAAGGGAATACTGTACTCtcttgtaaacaaaaacaaatgaaaataaagcttTCACGAGCATATGCAACATTTCTTAGAGGAAACAGACtcttaaaatgcaaacaaaagttTGTTAAGGGAAGCAATACTGTTATGAGCAAATCATTAAAATGGTTTTCATTATAAAAATCCATCTTATCATCCTTTCTGTACGTTATGGCCAAAATTATTTGAACATTTGGCATATTTAAAGTGTTAGTTACCCCCAATATAAGCAGTCTGTTATTGATTACTGATCCTCATTTCAGTCCAATCACCTGAGACATTCGTTCATATTCAGaacataaattaagatattttagatgaaatcctaaAGCATCTTCCTCAGACAACAAGGATCATGagaagtccagaaaaggaaccaaaaacatctTCACACATGTGACTCTCAAAAGACTTTTGCGCACCAAACATTTTGTATTGGATTGTAATTTCTGTAGTACACATGCTCCCCTAAATGAAAGAGCAAATATTGTGGGAACAAAGTCAtattaactgtttttatttttatgtttggcacacaaaagtgttcttggagctttgtatgattaccgTTAAACCACTGACGTCACGTGTTTGTCTTGGAATGTTAGCTCCTGTTCTaggctgtctatggaggatgagggagctctcagatttcatctaaaatatcttaatttgtgttctgaagataaacaatAGTCTCaggggatttttttatttttgggtgaactaaccgttTAAGAAAGTTTAGATGTTAAAGTTAAgctaaattaataatattcataaaatgagtgAAATATGCTTTATAAACTAGAGCTGGCGTAAGGAGATTTAGGTCATTTTCCTTACCAACTTCACTGTCAAAATGATCATGTTCTTTCATTGAATTCAAACCTCTCAGGAAATATGGACATTATGCTAGTAGATAAGCCGCTGCCAGACACACCAAATATTACAGATAAGTAACATCTGCATGTTTCATTAAACACGGTCGTGTTTTTGGAGGCAAAAAACATCCCAATGTTTACTAGTTTTGACCACCGTTGCATTTTCCCCATCACCTTTTGCACCTTTAGGCGCTCCATAACAATAAAAGAATCTATGTGTAGAACTTTCTTCATGACATTCACATCATTAATGTGCGGATTCTGTGTGGACCTGGTCAGGAGCAAAATATCAGCAGGACCGTAGATTTCCAATGGAAAAAGCTGCCTCTACATTTATTACATTGTAAAGCTACGGTTACGCTATTTTGCCGGTAGCTCCTGGCATAAAGACCCGGTGGTGAAGTAACTGCTGTACAGATTTCCAAAGTGCTCTCATCTCATGtgattgtatatataaatatctttaaTAAGAAGGAAGTTTTAGTTCAGCCAGACATAACGTGTTCAAGTATCAGAGCATATCACCCTCGTTTCTATTGAGGTAAAGTCTGTTTTATATTGGCACATTcatttttaactttgtttttaactaaatttgaatattcggtctgaaatcgcatgcaagtatgacttcagaacaacattagcactatttaattggcTGTGTGCAGTGCTTTACTTTGATAGTCGTTGGCTGattatatgatttcactatttagataCTTTAGATACactattaaattacttttctgaaattatattattaaggagaacgtctgaatgtgcgaatataaaaccgacTTTATCCCAATCTCGTTTCTGTGACTACTCGGAGCTGGTTGTGAGCTGCAGCGTGTGTGTTTTGTAACTGAAAGCCAATGTACTGTCATAAACAATTGTTTACAGTTTGTTTCTGAGGTAAACCCTCGGTCTGGTCCAGGCTTCCATGAGATGGACGATTGGTCTTTCTCTGTGGTCTGCCGAATTGCTGCCTGTTATTTGAAGTCAGGTTTGTGCTCAGTGATCTGTTGTCCTCTAGTTAAGCTCTCATTGCCCTGCTGAAAGAAACAGCTTATattagcctaggctggttttagctgatggaccagcctggttttagagaggttttggccatttccaggttggTTTCACCAATTTCCACCTTGGTCTTAGCTggaatgaccagctaaaacataggcctcaaactggattcctggatggctgcagctctgcacagttttgctcccaccttaatcaaacacagctgatccaactaatcatgGTGATCAACACTATTAGTGACCATTAAGCAGTTGTGTGTtgaaggtggttggagctaaactatgcagagctgtggccctccaggaattgaatttgaGACCATTGAGCCAACACCATCCTGGTTTAAACTGgaaatagctggttttggctggactcccagcctgactaagctggtcaagctggttttagctggtcatctcccagcctgaccagctaagaccaggctggaaatggccaaaaagcGGTAAATAAATGGAGTTTGAGCGCCAGGGGTAGAAAACCCCTCTACAGTTACtcaaatttatttcattaataagaAAAGCaatcaatatattaataaaagtgaaaaacaaaACCTAAGCTTTATATTCAACACATTTAGTTCAAATCATCATAAACCAAACAaacttaggctggtttaagctgctttttttttcagcagggtgggcAGTTCTCCATCTGGGACGAGCGCGTGTTCACCCTTCTGTCTTGCATTGAGATGAATCAGACATGAAACGTGCAGTCTGGACTTTCATGTGCCTTCATCTGTCTTTCTCCAGCTCTGACATTGATTTCAATAAACCGGTTCAACACAAACGTGGTCATTCATTGTTTCATGTTTCCGTGTTGCCCCTTCATTGCTCGTTTAATTTATAAAGTGCAATCATGTTGGCTAATTGAAGGATGCATTTcctttttttaggtgaattatgttttaaatttctgaataaattatgtaaattatgaataaattatgattttataagGTGTAAAAGTGATTTCTTATAGTTATATTGTGTCTTGTATTGTGTCCGTGTTTGGCCCCATTAAGAATTTGTGAAAGTTCATTAgacacaattaaatattaaacaccGCAGCATTTGCAAACTAGAAACTTCTTGAAAGCCATTTCATGACTTTAAACCATGAACACTTAATactttatcatttattcattcattttcaactgcTTTTTGGGACCGggttgcgggggcagcagtcttatcAGAGAACCCTAAATTTCCATCTCCTcagacacttccttcagctcctccagggggatcccgatGCTTTCCcgggccagccaagagacatagtgcctccagcgtgtcctgggtctccTCCAGGtaagacatgcctggaacacctccctaggtaggtgtccaggaggcatctgaaacagatgcccaagccacctcagctgacttctctcgatgtggaggagcggctctactccaagctcctcccgggtgactgCTCCTCACACTATCTACAAGGTTGCACCCTACCACCCTGCGAAGGAATCTCACttcagccgct

Function

GO:

id name namespace
GO:0006487 protein N-linked glycosylation biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0005793 endoplasmic reticulum-Golgi intermediate compartment cellular_component
GO:0005795 Golgi stack cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0008375 acetylglucosaminyltransferase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070912-27 Predicted to enable acetylglucosaminyltransferase activity. Predicted to be involved in protein N-linked glycosylation. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in Golgi stack; endoplasmic reticulum; and endoplasmic reticulum-Golgi intermediate compartment. Orthologous to human MGAT4A (alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase A).

Ensembl:

ensembl_id ENSDART00000174720

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00074961 lncRNA downstream 542232 6531549 ~ 6548796 (-) True XLOC_037614
TCONS_00073869 lncRNA downstream 588935 6414784 ~ 6502093 (-) True XLOC_037612
TCONS_00075290 lncRNA downstream 2045039 5044975 ~ 5045989 (-) True XLOC_037603
TCONS_00073852 lncRNA downstream 2046940 5043087 ~ 5044088 (-) False XLOC_037603
TCONS_00075289 lncRNA downstream 2223589 4866100 ~ 4867439 (-) True XLOC_037602
TCONS_00073887 lncRNA upstream 144047 7357819 ~ 7359484 (-) True XLOC_037626
TCONS_00075291 lncRNA upstream 285488 7499260 ~ 7505531 (-) True XLOC_037631
TCONS_00075292 lncRNA upstream 727997 7941769 ~ 7942597 (-) True XLOC_037636
TCONS_00075293 lncRNA upstream 946569 8160341 ~ 8163995 (-) True XLOC_037637
TCONS_00075294 lncRNA upstream 1070383 8284155 ~ 8286208 (-) True XLOC_037638
TCONS_00073878 mRNA downstream 1725 7081577 ~ 7089303 (-) True XLOC_037621
TCONS_00073877 mRNA downstream 99378 6963039 ~ 6991650 (-) True XLOC_037620
TCONS_00073876 mRNA downstream 163441 6915611 ~ 6927587 (-) True XLOC_037619
TCONS_00073874 mRNA downstream 429362 6658699 ~ 6661666 (-) True XLOC_037617
TCONS_00073872 mRNA downstream 429363 6658594 ~ 6661665 (-) False XLOC_037617
TCONS_00073882 mRNA upstream 14311 7228083 ~ 7238839 (-) True XLOC_037623
TCONS_00073883 mRNA upstream 27124 7240896 ~ 7257877 (-) True XLOC_037624
TCONS_00073884 mRNA upstream 61413 7275185 ~ 7287375 (-) False XLOC_037625
TCONS_00073886 mRNA upstream 61414 7275186 ~ 7287128 (-) False XLOC_037625
TCONS_00073885 mRNA upstream 61414 7275186 ~ 7287128 (-) True XLOC_037625
TCONS_00073875 other downstream 373227 6717677 ~ 6717801 (-) True XLOC_037618
TCONS_00073868 other downstream 681757 6409157 ~ 6409271 (-) True XLOC_037613
TCONS_00073841 other downstream 2643924 4443918 ~ 4447104 (-) True XLOC_037598
TCONS_00073830 other downstream 3571317 3508318 ~ 3519711 (-) True XLOC_037592
TCONS_00073827 other downstream 3594449 3490831 ~ 3496579 (-) True XLOC_037591
TCONS_00073897 other upstream 308663 7522435 ~ 7539023 (-) True XLOC_037632
TCONS_00073901 other upstream 427988 7641760 ~ 7655301 (-) True XLOC_037633
TCONS_00073935 other upstream 2529787 9743559 ~ 9805319 (-) False XLOC_037657
TCONS_00073936 other upstream 2556563 9770335 ~ 9805319 (-) True XLOC_037657
TCONS_00073961 other upstream 3632146 10845918 ~ 10846549 (-) True XLOC_037667

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000037_01925100_01960498.mRNA True 2125 mRNA 0.48 15 CI01000037 1925100 ~ 1960722 (+)