RNA id: TCONS_00073878


Basic Information

Item Value
RNA id TCONS_00073878
length 504
RNA type mRNA
GC content 0.42
exon number 3
gene id XLOC_037621
representative True

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 7081577 ~ 7089303 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TTTAAAATGGCCGCTTTCATAATAATCTCGCGTTTGACATACCTGTAGTTTGTTTAGTCGTTTTTACCAAATTCCTACTCTAATATTTCGCTTTATTGTGCTCGGATGAAAGCTCTGCAGGATGCCCAAATATTATGAAGATAAAGAGGATGACGGCCGCGCCTGCTCTGGATTAAGAGAAGATTTTAAAGCCTGTCTCCTTCAGCATGACTGTGTAGTGAAGGAAGGCAAGAAGCCCAGCGAGTGTCTGAAGGAAGGACATTGCAGAAGCATACAGGTGGCTTTCTTTGAGTGCAAGAGATCCATGCTGGACACCCGATCTCGATTCAGAGGCAGAAAAGGAGAATGAAAATCACCCACCTTGTGTTTTGAATGAAGATGCTGTGTCTTTCTGCTTCACACACATTTGCTTGTAGAGAAAAACTGCTGTCGTTGACTTATGAGACTCTCTTGAACTGCACCAAtgtcatcaaataaaataaagtgttttccaGTTCTGAATAA

Function

GO:

id name namespace
GO:0033617 mitochondrial cytochrome c oxidase assembly biological_process
GO:0003674 molecular_function molecular_function

KEGG:

id description
ko04714 Thermogenesis
ko03029 Mitochondrial biogenesis

ZFIN:

id description
ZDB-GENE-060825-53 Predicted to be involved in mitochondrial cytochrome c oxidase assembly. Predicted to be active in mitochondrion. Human ortholog(s) of this gene implicated in fatal infantile cardioencephalomyopathy due to cytochrome c oxidase deficiency 3. Orthologous to human COA5 (cytochrome c oxidase assembly factor 5).

Ensembl:

ensembl_id ENSDART00000146609

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00074961 lncRNA downstream 532781 6531549 ~ 6548796 (-) True XLOC_037614
TCONS_00073869 lncRNA downstream 579484 6414784 ~ 6502093 (-) True XLOC_037612
TCONS_00075290 lncRNA downstream 2035588 5044975 ~ 5045989 (-) True XLOC_037603
TCONS_00073852 lncRNA downstream 2037489 5043087 ~ 5044088 (-) False XLOC_037603
TCONS_00075289 lncRNA downstream 2214138 4866100 ~ 4867439 (-) True XLOC_037602
TCONS_00073887 lncRNA upstream 268516 7357819 ~ 7359484 (-) True XLOC_037626
TCONS_00075291 lncRNA upstream 409957 7499260 ~ 7505531 (-) True XLOC_037631
TCONS_00075292 lncRNA upstream 852466 7941769 ~ 7942597 (-) True XLOC_037636
TCONS_00075293 lncRNA upstream 1071038 8160341 ~ 8163995 (-) True XLOC_037637
TCONS_00075294 lncRNA upstream 1194852 8284155 ~ 8286208 (-) True XLOC_037638
TCONS_00073877 mRNA downstream 89927 6963039 ~ 6991650 (-) True XLOC_037620
TCONS_00073876 mRNA downstream 153990 6915611 ~ 6927587 (-) True XLOC_037619
TCONS_00073874 mRNA downstream 419911 6658699 ~ 6661666 (-) True XLOC_037617
TCONS_00073872 mRNA downstream 419912 6658594 ~ 6661665 (-) False XLOC_037617
TCONS_00073873 mRNA downstream 419920 6658699 ~ 6661657 (-) False XLOC_037617
TCONS_00073880 mRNA upstream 1725 7091028 ~ 7213772 (-) False XLOC_037622
TCONS_00073879 mRNA upstream 1725 7091028 ~ 7213772 (-) False XLOC_037622
TCONS_00073881 mRNA upstream 7692 7096995 ~ 7212973 (-) True XLOC_037622
TCONS_00073882 mRNA upstream 138780 7228083 ~ 7238839 (-) True XLOC_037623
TCONS_00073883 mRNA upstream 151593 7240896 ~ 7257877 (-) True XLOC_037624
TCONS_00073875 other downstream 363776 6717677 ~ 6717801 (-) True XLOC_037618
TCONS_00073868 other downstream 672306 6409157 ~ 6409271 (-) True XLOC_037613
TCONS_00073841 other downstream 2634473 4443918 ~ 4447104 (-) True XLOC_037598
TCONS_00073830 other downstream 3561866 3508318 ~ 3519711 (-) True XLOC_037592
TCONS_00073827 other downstream 3584998 3490831 ~ 3496579 (-) True XLOC_037591
TCONS_00073897 other upstream 433132 7522435 ~ 7539023 (-) True XLOC_037632
TCONS_00073901 other upstream 552457 7641760 ~ 7655301 (-) True XLOC_037633
TCONS_00073935 other upstream 2654256 9743559 ~ 9805319 (-) False XLOC_037657
TCONS_00073936 other upstream 2681032 9770335 ~ 9805319 (-) True XLOC_037657
TCONS_00073961 other upstream 3756615 10845918 ~ 10846549 (-) True XLOC_037667

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU199493 True 207 TUCP 0.40 1 CI01000037 1970185 ~ 1970391 (+)
striped catfish (Pangasianodon hypophthalmus) TU96024 True 1004 lncRNA 0.39 3 NC_047599.1 11690726 ~ 11692474 (+)