RNA id: TCONS_00073901


Basic Information

Item Value
RNA id TCONS_00073901
length 705
RNA type processed_transcript
GC content 0.50
exon number 6
gene id XLOC_037633
representative True

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 7621622 ~ 7655301 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTTCTGGAATGGCTCTGTTTTCAGACTGACTGCAGCTAAGCTGATTGTGACGCACCGCATTCACAGCCGAGAGAGACTAGGACGGACACATATAGAAGTTGAGGTTCGGTTACAACCCAACGCAATGAAGCGCGCTGTGCCGTCGGTAAACGGGTGATTCTGACGGAACTCCGTAGCAATTTCACGCGCACGTTACCAGAGCGTCAGTTCCTGTGATCCGCGTCTTGGGAGTCGGACGGACTGTCGCTCCCCTGGCTTCATACCACAGAGGCTCAGCTCCTCCTGTCTGGATATACTTCTAAAAAAGTTACAGAAAACTGGCTCTGCAGTGGCATCCCGACAAAAACCCAGACAACAAGGAGGAGGCGGAGAAAAAATTCAAGGAGATAGCAGAGGCCTACGAAGTTCTTTCAGACAAGAGCAAGCGAGATGATTACGACAGATATGGTAGATCAGACATGCCAAGTTCTGGCTCAGGTAGCTCAGGTTCATTTCCTGATGACTTCCCAGGATTCACCTTCACATTCCGCAGTCCAGATGAGGTGTTTCGAGAGTTCTTCGGAGGGCAGGACCCATTCGCTGACTTTTTCGATGATTTCCCATTTGGTGGAATGCACAGTGGTTTTCACAGTTCCTCCAGACTTGGGCCCAGTCGCTTCTTCTCCTTTCCCTCAGCAAATGCTGATTTCACCTCCTTCTCGTCTT

Function

GO: NA

KEGG:

id description
ko04141 Protein processing in endoplasmic reticulum
ko03110 Chaperones and folding catalysts

ZFIN:

id description
ZDB-GENE-061013-537 Human ortholog(s) of this gene implicated in distal spinal muscular atrophy type 5. Orthologous to human DNAJB2 (DnaJ heat shock protein family (Hsp40) member B2).

Ensembl:

ensembl_id ENSDART00000136438

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00075291 lncRNA downstream 136229 7499260 ~ 7505531 (-) True XLOC_037631
TCONS_00073887 lncRNA downstream 282276 7357819 ~ 7359484 (-) True XLOC_037626
TCONS_00074961 lncRNA downstream 1092964 6531549 ~ 6548796 (-) True XLOC_037614
TCONS_00073869 lncRNA downstream 1139667 6414784 ~ 6502093 (-) True XLOC_037612
TCONS_00075290 lncRNA downstream 2595771 5044975 ~ 5045989 (-) True XLOC_037603
TCONS_00075292 lncRNA upstream 286468 7941769 ~ 7942597 (-) True XLOC_037636
TCONS_00075293 lncRNA upstream 505040 8160341 ~ 8163995 (-) True XLOC_037637
TCONS_00075294 lncRNA upstream 628854 8284155 ~ 8286208 (-) True XLOC_037638
TCONS_00073916 lncRNA upstream 1353822 9009123 ~ 9024269 (-) False XLOC_037644
TCONS_00073915 lncRNA upstream 1353822 9009123 ~ 9024269 (-) False XLOC_037644
TCONS_00073898 mRNA downstream 1068 7621622 ~ 7640692 (-) False XLOC_037633
TCONS_00073896 mRNA downstream 102434 7515864 ~ 7539326 (-) False XLOC_037632
TCONS_00073895 mRNA downstream 102463 7515864 ~ 7539297 (-) False XLOC_037632
TCONS_00073894 mRNA downstream 197007 7423916 ~ 7444753 (-) True XLOC_037630
TCONS_00073893 mRNA downstream 197170 7410798 ~ 7444590 (-) False XLOC_037630
TCONS_00073902 mRNA upstream 7337 7662638 ~ 7673856 (-) True XLOC_037634
TCONS_00073903 mRNA upstream 22835 7678136 ~ 7683799 (-) False XLOC_037635
TCONS_00073904 mRNA upstream 22836 7678137 ~ 7684002 (-) True XLOC_037635
TCONS_00073905 mRNA upstream 632967 8288268 ~ 8297344 (-) False XLOC_037639
TCONS_00073906 mRNA upstream 634562 8289863 ~ 8296723 (-) False XLOC_037639
TCONS_00073897 other downstream 102737 7522435 ~ 7539023 (-) True XLOC_037632
TCONS_00073875 other downstream 923959 6717677 ~ 6717801 (-) True XLOC_037618
TCONS_00073868 other downstream 1232489 6409157 ~ 6409271 (-) True XLOC_037613
TCONS_00073841 other downstream 3194656 4443918 ~ 4447104 (-) True XLOC_037598
TCONS_00073830 other downstream 4122049 3508318 ~ 3519711 (-) True XLOC_037592
TCONS_00073935 other upstream 2088258 9743559 ~ 9805319 (-) False XLOC_037657
TCONS_00073936 other upstream 2115034 9770335 ~ 9805319 (-) True XLOC_037657
TCONS_00073961 other upstream 3190617 10845918 ~ 10846549 (-) True XLOC_037667
TCONS_00073965 other upstream 3893471 11548772 ~ 11550397 (-) False XLOC_037669
TCONS_00073967 other upstream 3896303 11551604 ~ 11551704 (-) True XLOC_037669

Expression Profile

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