RNA id: TCONS_00073904


Basic Information

Item Value
RNA id TCONS_00073904
length 1434
RNA type mRNA
GC content 0.51
exon number 5
gene id XLOC_037635
representative True

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 7678136 ~ 7684002 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGAAGCAAGACATTGCACATCCTGAAGATGGTATCGACAGTGGTGGCTTCTCCTGTTACACACACTGTAACCGCACAACGCTCCAGCGTGAGTGCATTTCTGTACATGTCGGCCAAGCTGGAGCACAGATTGGGAATGCGTGCTGGGAGCTTTACTGTCTGGAGCATGGTATCCAGCCAGATGGACAGATGCCCAGTGACCGGTCAATAGGAGGAGGAGATGACTCCTTCAACACTTTCTTCAGTGAAACAGCTTCAGGGAAACACGTTCCACGTGCCATCTTTGTTGATCTTGAGCCCACTGTTATTGATGAAGTGCGGACAGGAACCTACCGCCAGCTCTTCCACCCTGAACAACTGATTACTGGGAAAGAGGATGCTGCCAATAACTATGCCAGAGGACACTACACCATTGGCAAGGAGATTATTGATTCAGTTCTGGATCGTATACGCAAACTGTCCGACCAATGCACTGGCCTTCAAGGTTTCTTAGTGTTCCACAGTTTCGGTGGAGGCACTGGCTCTGGCTTCACCTCTCTGCTGATGGAGCGTCTCTCTGTCGACTATGGCAAGAAGTCCAAGCTTGAGTTTGCCATCTATCCTGCTCCTCAAGTGTCCACAGCAGTGGTGGAGCCCTATAACTCCATCCTGACCACCCACACCACCCTGGAGCACTCCGATTGTGCCTTCATGGTGGACAATGAAGCCATCTACGACATCTGTCGCAAAAACCTGGACATCGAGCGTCCGACCTACACCAACCTCAACAGGCTCATTGGGCAGATTGTGTCCTCCATTACAGCTTCGCTGAGATTCGATGGAGCTCTCAATGTGGATCTCACCGAGTTCCAAACCAATCTGGTGCCCTATCCCCGCATTCACTTCCCTCTGGCCACATATGCACCAGTGATTTCTGCTGAAAAGGCATATCATGAGCAGCTCTCTGTGGCCGACATAACCAACGCCTGCTTTGAGCCGTCCAATCAGATGGTGAAGTGTGATCCTCGTCACGGTAAATACATGGCCTGCTGTCTTCTGTATCGTGGAGATGTGGTGCCCAAAGATGTCAACTCTGCCATCGCTGCCATTAAAACCAAACGCACCATCCAGTTTGTTGATTGGTGCCCCACTGGCTTCAAAGTAGGCATCAACTATCAGCCTCCAACAGTGGTTCCTGGTGGAGATCTGGCCAAAGTACAGAGAGCCGTGTGCATGTTGAGCAACACCACAGCTATCGCTGAGGCCTGGGCTCGTCTGGACCACAAGTTTGACCTGATGTACGCCAAGAGAGCCTTTGTGCACTGGTATGTGGGAGAGGGTATGGAAGAAGGAGAGTTTTCGGAGGCCAGAGAAGACCTGGCAGCTCTGGAGAAGGATTATGAAGAAGTCGGCACTGACAGCATTGGAGATGATGAAGACGGAGTtgaattttaa

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000016360

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00075291 lncRNA downstream 172606 7499260 ~ 7505531 (-) True XLOC_037631
TCONS_00073887 lncRNA downstream 318653 7357819 ~ 7359484 (-) True XLOC_037626
TCONS_00074961 lncRNA downstream 1129341 6531549 ~ 6548796 (-) True XLOC_037614
TCONS_00073869 lncRNA downstream 1176044 6414784 ~ 6502093 (-) True XLOC_037612
TCONS_00075290 lncRNA downstream 2632148 5044975 ~ 5045989 (-) True XLOC_037603
TCONS_00075292 lncRNA upstream 257767 7941769 ~ 7942597 (-) True XLOC_037636
TCONS_00075293 lncRNA upstream 476339 8160341 ~ 8163995 (-) True XLOC_037637
TCONS_00075294 lncRNA upstream 600153 8284155 ~ 8286208 (-) True XLOC_037638
TCONS_00073916 lncRNA upstream 1325121 9009123 ~ 9024269 (-) False XLOC_037644
TCONS_00073915 lncRNA upstream 1325121 9009123 ~ 9024269 (-) False XLOC_037644
TCONS_00073902 mRNA downstream 4281 7662638 ~ 7673856 (-) True XLOC_037634
TCONS_00073899 mRNA downstream 22894 7634847 ~ 7655243 (-) False XLOC_037633
TCONS_00073900 mRNA downstream 25345 7640671 ~ 7652792 (-) False XLOC_037633
TCONS_00073898 mRNA downstream 37445 7621622 ~ 7640692 (-) False XLOC_037633
TCONS_00073896 mRNA downstream 138811 7515864 ~ 7539326 (-) False XLOC_037632
TCONS_00073905 mRNA upstream 604266 8288268 ~ 8297344 (-) False XLOC_037639
TCONS_00073906 mRNA upstream 605861 8289863 ~ 8296723 (-) False XLOC_037639
TCONS_00073907 mRNA upstream 606647 8290649 ~ 8314028 (-) True XLOC_037639
TCONS_00073908 mRNA upstream 745237 8429239 ~ 8454060 (-) True XLOC_037640
TCONS_00073909 mRNA upstream 950227 8634229 ~ 8670158 (-) False XLOC_037641
TCONS_00073901 other downstream 22836 7641760 ~ 7655301 (-) True XLOC_037633
TCONS_00073897 other downstream 139114 7522435 ~ 7539023 (-) True XLOC_037632
TCONS_00073875 other downstream 960336 6717677 ~ 6717801 (-) True XLOC_037618
TCONS_00073868 other downstream 1268866 6409157 ~ 6409271 (-) True XLOC_037613
TCONS_00073841 other downstream 3231033 4443918 ~ 4447104 (-) True XLOC_037598
TCONS_00073935 other upstream 2059557 9743559 ~ 9805319 (-) False XLOC_037657
TCONS_00073936 other upstream 2086333 9770335 ~ 9805319 (-) True XLOC_037657
TCONS_00073961 other upstream 3161916 10845918 ~ 10846549 (-) True XLOC_037667
TCONS_00073965 other upstream 3864770 11548772 ~ 11550397 (-) False XLOC_037669
TCONS_00073967 other upstream 3867602 11551604 ~ 11551704 (-) True XLOC_037669

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000037_01670886_01672687.mRNA False 1872 mRNA 0.44 4 CI01000037 1670886 ~ 1673145 (+)