RNA id: TCONS_00074961



Basic Information


Item Value
RNA id TCONS_00074961
length 1118
lncRNA type inter_gene
GC content 0.44
exon number 19
gene id XLOC_037614
representative True

Chromosome Information


Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 6531549 ~ 6548796 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence


GGACGTGGCAGTCGCGCTTCAAGCAGTGAAACTCACATCAAACAAtgAATGAATGGTGGTAAGAGTCAAAGCAGAGGATTAAATCCTTTGAAAGATGCTGCTCATCATGTGAGGCTGGGGAAGGATAAAGACATGCTTACGTGGAGGTACATCAGTGACATCAAAGAGTGTGTCATGTGGAGGAGTTGACCTTCTCTCCTGTAACAAACATGAAAAAGCAAAGTCTCTTCATGAGCCATTATCTTTGAATTCTGAACAGAGTGAGCTTCAAAGAGcGCCTCCATGAGCCTGTGGCTTTAACCAACACAAACAgagctgtcttctacagagtaCCCCAATGAGCTAAATGCTTTGACAAACACAgagctgtcttctacagagTACCTCTATGAGCTCGTCACTTTGACAAACACAgagttgtcttctacagagCACCTCCATAAGCCAGTCGCTTTGGcaaacacaaacagagctgtcttctacagagTACCTCTATGAGCTCGTCACTTTGACCAACACAGAGTTGTCTTCTAAAGAgtaCCTCCATGAGCCAGTCACTTTGTCAAACACAAACAGAGTTGTCTTccacagagtaCCTTCATGAGTCCGTCgctttgacaaacacaaacagagttgtcttctacagagCACCTCCATAAGCCAGTTGCTTTGTCAAACACAAACAgagttgtcttctacagagtaTCTCAATGAGCTCGtcactttgacaaacacaaacagaggtgtcttctacagagtaCCCCAATGAGCTAAATGCTTCGACAAACACAgagctgtcttctacagagtaCCCCAATGAGCTAAATGCTTTGACAAACACAgagctgtcttctacagagTATCCCAATGAGCTCGtcactttgacaaacacaaacagaggtgtcttctacagagtaCCCCAATGAGCTAAATGCTTCGACAAACACAgagctgtcttctacagagCACCTCCATAGGCCAGTTgctttgacaaacacaaacagagctgtcttctacagagGAAATAACAGGTGAATCTTGACAGAAATCCAGGAAGCCAGACAGTGATGATGGTGATGGTAAGAATTTCTGTCAATAACAATGCAGGAAGAAACTAA

Function


GO:

id name namespace
GO:0009888 tissue development biological_process
GO:0090344 negative regulation of cell aging biological_process
GO:0050793 regulation of developmental process biological_process

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TCONS_00073869 lncRNA downstream 29456 6414784 ~ 6502093 (-) True XLOC_037612
TCONS_00075290 lncRNA downstream 1485560 5044975 ~ 5045989 (-) True XLOC_037603
TCONS_00073852 lncRNA downstream 1487461 5043087 ~ 5044088 (-) False XLOC_037603
TCONS_00075289 lncRNA downstream 1664110 4866100 ~ 4867439 (-) True XLOC_037602
TCONS_00075288 lncRNA downstream 1989728 4539475 ~ 4541821 (-) False XLOC_037600
TCONS_00073887 lncRNA upstream 809023 7357819 ~ 7359484 (-) True XLOC_037626
TCONS_00075291 lncRNA upstream 950464 7499260 ~ 7505531 (-) True XLOC_037631
TCONS_00075292 lncRNA upstream 1392973 7941769 ~ 7942597 (-) True XLOC_037636
TCONS_00075293 lncRNA upstream 1611545 8160341 ~ 8163995 (-) True XLOC_037637
TCONS_00075294 lncRNA upstream 1735359 8284155 ~ 8286208 (-) True XLOC_037638
TCONS_00073867 mRNA downstream 29058 6393368 ~ 6502491 (-) False XLOC_037612
TCONS_00073866 mRNA downstream 150896 6371926 ~ 6380653 (-) True XLOC_037611
TCONS_00073865 mRNA downstream 159014 6371919 ~ 6372535 (-) False XLOC_037611
TCONS_00073864 mRNA downstream 323482 6118362 ~ 6208067 (-) True XLOC_037610
TCONS_00073862 mRNA downstream 614794 5893608 ~ 5916755 (-) False XLOC_037609
TCONS_00073870 mRNA upstream 58718 6607514 ~ 6618067 (-) True XLOC_037615
TCONS_00073871 mRNA upstream 74740 6623536 ~ 6624663 (-) True XLOC_037616
TCONS_00073872 mRNA upstream 109798 6658594 ~ 6661665 (-) False XLOC_037617
TCONS_00073873 mRNA upstream 109903 6658699 ~ 6661657 (-) False XLOC_037617
TCONS_00073874 mRNA upstream 109903 6658699 ~ 6661666 (-) True XLOC_037617
TCONS_00073868 other downstream 122278 6409157 ~ 6409271 (-) True XLOC_037613
TCONS_00073841 other downstream 2084445 4443918 ~ 4447104 (-) True XLOC_037598
TCONS_00073830 other downstream 3011838 3508318 ~ 3519711 (-) True XLOC_037592
TCONS_00073827 other downstream 3034970 3490831 ~ 3496579 (-) True XLOC_037591
TCONS_00073809 other downstream 4194246 2330861 ~ 2337303 (-) True XLOC_037575
TCONS_00073875 other upstream 168881 6717677 ~ 6717801 (-) True XLOC_037618
TCONS_00073897 other upstream 973639 7522435 ~ 7539023 (-) True XLOC_037632
TCONS_00073901 other upstream 1092964 7641760 ~ 7655301 (-) True XLOC_037633
TCONS_00073935 other upstream 3194763 9743559 ~ 9805319 (-) False XLOC_037657
TCONS_00073936 other upstream 3221539 9770335 ~ 9805319 (-) True XLOC_037657

Expression Profile


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