RNA id: TCONS_00073871


Basic Information

Item Value
RNA id TCONS_00073871
length 1128
RNA type mRNA
GC content 0.50
exon number 1
gene id XLOC_037616
representative True

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 6623536 ~ 6624663 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGTTTGCATGTAATGGCAGCTCATTGGAGGCATGCGGCCTTCTCGAACCAACGGAAACCGAGATGCAAGAGGCTGATACTGCCCTCATGCCCACCACTCTCAGGGTGGCACTGGCTGCCATAATGATCTTCATGATCACCATAGGTTTCCTTGGCAATGGCATTGTGTGTCTAATAGTGTATCAGAAGCCTGCAATGCGTTCAGCTATAAATCTGCTCTTAGCCACACTGGCGTTTTCTGACATCATGCTGTCACTGCTATGCATGCCATTCACCGCCGTCACTCTCGCAACTACGGACTGGAGCTTTGGAATGGGATTCTGTCGTGTTTCCGTCATGTTATATTGGCTGTTTGTTCTAGAAGGGGTGTCTATCCTTCTGATCATCAGCGTTGATCGATTCCTCATTATTGTTCAACGGCAGGACAAGCTGACTCCACATCGGGCAAAAATCCTCATTGGCGCATCATGGGCTCTGTCGCTTTGCGTGTCCCTACCATCTCTTGTTGGTTGGAGGACAGCAGGGATTGGGGCACAAGTGCCACAGTGCATTCTGGGATACAGCGAATCCCTGGCAGACCGGGGTTACACAGTACTGCTTGCAGTCGCTGTGTTTTTTGTGCCGTTTGGTGTGATGTTGTATTCATACCTATGTATTCTCAATACGGTTCGACGGAATGCTCTGCGCATCCACAATCACACTAGTGAAGGCAGCGTTGCAATCAGCCATGTCAGCAAGTTGGGTTTAACCGGTTTACAGCGGCCCCAAGTCAACATAGACATGAGTTTCAAAACAAGAGCCTTCACTACCATCCTTATCCTTTTCATTGGCTTCTCCGTGTGCTGGTTGCCACACACAGTGGTGAGTCTGTTGTCGGTGTTCAGCAGACGCTTCTACCTCAGCCCTGCATTTTACCCAGTGAGCATCGGGGCTCTTTGGTTGAGCTACCTAAAAGCGGTCTTCAACCCGGTGATATACTGCTGGAGAATCCGAAAGTTTCGAGAGGCCTGTCTGGAGTTTATGCCCAAGACCTTTCATCTGTGTCCAAAGATTCCAGGCCGAAGTCGCAGGCGCATAAGGCCCAGCAACATCTATGTGTGCAGCAGCGAGACTCAGTCTTCAGTCTAG

Function

GO: NA

KEGG:

id description
ko04030 G protein-coupled receptors

Ensembl:

ensembl_id ENSDART00000092537

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00074961 lncRNA downstream 74740 6531549 ~ 6548796 (-) True XLOC_037614
TCONS_00073869 lncRNA downstream 121443 6414784 ~ 6502093 (-) True XLOC_037612
TCONS_00075290 lncRNA downstream 1577547 5044975 ~ 5045989 (-) True XLOC_037603
TCONS_00073852 lncRNA downstream 1579448 5043087 ~ 5044088 (-) False XLOC_037603
TCONS_00075289 lncRNA downstream 1756097 4866100 ~ 4867439 (-) True XLOC_037602
TCONS_00073887 lncRNA upstream 733156 7357819 ~ 7359484 (-) True XLOC_037626
TCONS_00075291 lncRNA upstream 874597 7499260 ~ 7505531 (-) True XLOC_037631
TCONS_00075292 lncRNA upstream 1317106 7941769 ~ 7942597 (-) True XLOC_037636
TCONS_00075293 lncRNA upstream 1535678 8160341 ~ 8163995 (-) True XLOC_037637
TCONS_00075294 lncRNA upstream 1659492 8284155 ~ 8286208 (-) True XLOC_037638
TCONS_00073870 mRNA downstream 5469 6607514 ~ 6618067 (-) True XLOC_037615
TCONS_00073867 mRNA downstream 121045 6393368 ~ 6502491 (-) False XLOC_037612
TCONS_00073866 mRNA downstream 242883 6371926 ~ 6380653 (-) True XLOC_037611
TCONS_00073865 mRNA downstream 251001 6371919 ~ 6372535 (-) False XLOC_037611
TCONS_00073864 mRNA downstream 415469 6118362 ~ 6208067 (-) True XLOC_037610
TCONS_00073872 mRNA upstream 33931 6658594 ~ 6661665 (-) False XLOC_037617
TCONS_00073873 mRNA upstream 34036 6658699 ~ 6661657 (-) False XLOC_037617
TCONS_00073874 mRNA upstream 34036 6658699 ~ 6661666 (-) True XLOC_037617
TCONS_00073876 mRNA upstream 290948 6915611 ~ 6927587 (-) True XLOC_037619
TCONS_00073877 mRNA upstream 338376 6963039 ~ 6991650 (-) True XLOC_037620
TCONS_00073868 other downstream 214265 6409157 ~ 6409271 (-) True XLOC_037613
TCONS_00073841 other downstream 2176432 4443918 ~ 4447104 (-) True XLOC_037598
TCONS_00073830 other downstream 3103825 3508318 ~ 3519711 (-) True XLOC_037592
TCONS_00073827 other downstream 3126957 3490831 ~ 3496579 (-) True XLOC_037591
TCONS_00073809 other downstream 4286233 2330861 ~ 2337303 (-) True XLOC_037575
TCONS_00073875 other upstream 93014 6717677 ~ 6717801 (-) True XLOC_037618
TCONS_00073897 other upstream 897772 7522435 ~ 7539023 (-) True XLOC_037632
TCONS_00073901 other upstream 1017097 7641760 ~ 7655301 (-) True XLOC_037633
TCONS_00073935 other upstream 3118896 9743559 ~ 9805319 (-) False XLOC_037657
TCONS_00073936 other upstream 3145672 9770335 ~ 9805319 (-) True XLOC_037657

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000037_02279319_02280446.mRNA True 1599 mRNA 0.48 1 CI01000037 2279158 ~ 2280756 (+)