RNA id: TCONS_00075289


Basic Information

Item Value
RNA id TCONS_00075289
length 421
lncRNA type inter_gene
GC content 0.37
exon number 2
gene id XLOC_037602
representative True

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 4866100 ~ 4867439 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CACCCCCAAAACAGGATCCTCCTTGTAAAACCAAAGACATTTCAGCATTTCAACTCAGTGTCCAAAAATCTAACCACGCAAAATTTTAAAATGGTTCAAATTAAGGTAGCCTGGTTGTCCCTTTTCTtctatttcttcttcttttatgtAAAAGCAATCTACAAACAGACAGGGGAAACTGGTAAGCTCCAGAAAACAAGAGCTGAAGCCCGTTCTTTCTCTTTCCTTCATTAATCAGACACTCGTGGGACAGatacaaacattcatttattGGAAAGATATTAACAAATCATTACTGTGAATCTGTTTTGGAATAATTTAACTGTCAATGCACAACAGCAGGCTCTTACGTGCTGACATATAGAGATGGCCGCTGTcaaataataacaaaatcaaTAAATTTGTTGCCCATAATGCCAGC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00075288 lncRNA downstream 324279 4539475 ~ 4541821 (-) False XLOC_037600
TCONS_00073839 lncRNA downstream 914274 3931723 ~ 3951826 (-) True XLOC_037596
TCONS_00075285 lncRNA downstream 1470579 3358397 ~ 3395521 (-) False XLOC_037589
TCONS_00075286 lncRNA downstream 1470846 3374635 ~ 3395254 (-) False XLOC_037589
TCONS_00075287 lncRNA downstream 1470846 3394009 ~ 3395254 (-) True XLOC_037589
TCONS_00073852 lncRNA upstream 175648 5043087 ~ 5044088 (-) False XLOC_037603
TCONS_00075290 lncRNA upstream 177536 5044975 ~ 5045989 (-) True XLOC_037603
TCONS_00073869 lncRNA upstream 1547345 6414784 ~ 6502093 (-) True XLOC_037612
TCONS_00074961 lncRNA upstream 1664110 6531549 ~ 6548796 (-) True XLOC_037614
TCONS_00073887 lncRNA upstream 2490380 7357819 ~ 7359484 (-) True XLOC_037626
TCONS_00073847 mRNA downstream 9333 4733536 ~ 4856767 (-) False XLOC_037601
TCONS_00073848 mRNA downstream 9333 4741618 ~ 4856767 (-) True XLOC_037601
TCONS_00073846 mRNA downstream 111354 4730398 ~ 4754746 (-) False XLOC_037601
TCONS_00073844 mRNA downstream 259637 4538527 ~ 4606463 (-) False XLOC_037600
TCONS_00073845 mRNA downstream 267217 4565622 ~ 4598883 (-) True XLOC_037600
TCONS_00073850 mRNA upstream 173546 5040985 ~ 5046315 (-) False XLOC_037603
TCONS_00073849 mRNA upstream 173546 5040985 ~ 5046315 (-) False XLOC_037603
TCONS_00073851 mRNA upstream 174595 5042034 ~ 5045378 (-) False XLOC_037603
TCONS_00073853 mRNA upstream 385698 5253137 ~ 5263947 (-) True XLOC_037604
TCONS_00073854 mRNA upstream 404085 5271524 ~ 5318873 (-) True XLOC_037605
TCONS_00073841 other downstream 418996 4443918 ~ 4447104 (-) True XLOC_037598
TCONS_00073830 other downstream 1346389 3508318 ~ 3519711 (-) True XLOC_037592
TCONS_00073827 other downstream 1369521 3490831 ~ 3496579 (-) True XLOC_037591
TCONS_00073809 other downstream 2528797 2330861 ~ 2337303 (-) True XLOC_037575
TCONS_00073808 other downstream 2588608 2226463 ~ 2277492 (-) False XLOC_037574
TCONS_00073868 other upstream 1541718 6409157 ~ 6409271 (-) True XLOC_037613
TCONS_00073875 other upstream 1850238 6717677 ~ 6717801 (-) True XLOC_037618
TCONS_00073897 other upstream 2654996 7522435 ~ 7539023 (-) True XLOC_037632
TCONS_00073901 other upstream 2774321 7641760 ~ 7655301 (-) True XLOC_037633
TCONS_00073935 other upstream 4876120 9743559 ~ 9805319 (-) False XLOC_037657

Expression Profile

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