RNA id: TCONS_00073853


Basic Information

Item Value
RNA id TCONS_00073853
length 3226
RNA type mRNA
GC content 0.40
exon number 8
gene id XLOC_037604
representative True

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 5253137 ~ 5263947 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

agaataattagcatagctgttgttcatagtgtatgtaaacaagatgcagaaacctgtgtggaaacctgctaagtgtatgctttactaaacagataggtctttaatctagttttgagtTATCAGGacggctattccagagtttaggagccataaatgagaaggctcaacctcctttacttgactttgctattctaggttctaccagaagccctgagttttgaaatcttaaagagcgagttaaagttagttagttaaataaacaggagctagattatttaaagctttattggtaagaagcaatattttaaatgcaatacgaatcttaacaggcagccagtgtaaggaggataaaattggggtgatatgacaAAACTCATCCTGCATGTTTGTTCTCAGACTACTGCAAATTCACAAGAGCTCAAAGCTTAAAAAGGAAACTGGCAGATGTCTTTAGTTCCTGACATTCACGTGATGTGGCTATATCCGCTGTAGACTGCAGTTGTGCGAATTCACACTGATGCCTGCAGTTGTGTGCAGCGCTTCTGTGAATGAGGCATGATGACATCCAATAGGAActttaaaatgcctttaaaacagatGAGCAGCCTGGACAGCTACATAATCGACAGCTCTCAAAAGAAGAGAAGCATACTGTGGCGACAGCGCTCTTTCAGCAGTCCCAAAAATCTGAACACTGAAGGGATGAAAGGCAGGACATTGTCACAGAGTCAGttgGCCAGAACACACTCAAATTCACTGGTGGATTATACTGATCCTCAGAGAACAATGGTTGTACTGGAGAAACAAGACAATGAAGTGTTTGGATTCGAAGTTCAAACATATGGTTTGAAGGTGAAAAACACCAGTATGGTAGAGATGTGCACTTTCGTGTGCAGGGTCCAGGATGGCAGTGCAGCGGAAACTGCAGGTTTAACTGCTGGTGACATCATATTGTCAGTAAATGGTGTGAGCATTGAGGGTTCCACACACCAGAACATTATCGAGTTGATTCGAGAATCCTCTAACACGCTGAAGTTGGAAACAGTCAGTGGGAGTGTCATGAAGAGGATTGAATTAGAGAAAAAGATGCACTATCTTAAGCAAACTCTTCGTGAGAAATGGGTGGAACTGCAATCTCTCACACTCAAAGAAAAACGCCTTACTCaagGTAATCTAAATGAGAGTGCTCAGTATCTGTCTGTTGACTCGGTAATGTCTCTCTCATCTCCAATGGGTCGCTCTGGGCAACGCTTTTCCAGCGACAGCAGTTGTCGCAGCATAATGACAGATGACAGCGAGGATGGTGCCTTCATGTCATCAGTATTTGATGACTCAAGTCCATTAAGCCCAATTGAGTCAAGCGGAAGCTTCTTCCAGCTGGAAGTGGGGGCATTGCGACCCATAACAAGAACACGCAGCATTAGCCTGACCGGCAGTAACAGTTCACTCTCCCCAGGCTGGGAAACTTCACCTTCATCTTTGTTCGGCACTCTTCCAAGAAGAAGCAGAAAAGGTAGTGTCAGGAAACACCTTCTGAAGTTCATACCCGGACTGAATCATTCTGTTGAGGAAGAGGAGTGCAGCTAAAAAACTGCTGATCTGATTAATTAAGGACCTTAAGCAGATAAAGGATCATACCGGTTTATATATGTCATACAAGAACTTGACTTTACATCTTTAAGTCGTGTTGAAAAGCGAAATGGAGTCCCACATGAGCATTATAGACTGGATATTGTCAATCTCTATATAATGTACTTTTCTTGTCAGTGGATCTGCACTGAAACAAACAACTGGCATTAATTGAACATTAACAGCGTGCATTCTAAATGGCAACTGCGTTGAAAGAATATTGTGAACATTGAGAAAATAATGTGAACATTACTTCTACTGCTCTAATACAGTGGTTAGAACTCGAGACTTGGAAgtgtctaaatcaggggtgtacaaactcggtcctggagggtttagctccaaccctaatcaaaccagcctgatctcacgagaaaacgtaagtattttacgttttgccagtttagtggctaatttgtacgaattcgtacgagtttagtcgtacgaaattgtacgattttaaaaaggaggcgtggcacctaaccccacccctaaacccaaccgtcattgggggatgagcaagtcgtactaaattgtacgaattcatacgaattagccactaaatccaaatgttacgaattgccttgagattgtgttgaatcaaacacacctgaaccagctaatcaagctcttgctaggtATACTAGGAACtacctggcaggtgtgttaaagcaagttggagctaaactgtgcaggacaccggactgagcttggacacccctggtctaaatgtttttatttctagCTTGATTCTCTTGATCTTTGAGTCTTGGAAGCTTCTAAATGTGTCTATTTCCAGCTTGATCTTTTATGTAACTAATCAAGATCATATGCTGTAGCATGCAAATGAGGTGTTGGTTTGTTGACAAAAGCATAACGTGTATGGCTGTAGAGAGCAGTGGCATGGAACATTGTTGTACTGTAGCAGTGCAAGGAAAGTTACATGTTTTCAGGTGGTCTGTGAAAATACCTGTGCTGCAAGTGCTTTCAAATCAACCAGATTTTACAGGTACTGTAGGTTTAGATGCAGGCTAGGGTTTCACTGTGATTTATATGTAGGTAAATGCTAAGAGTAAATTAGCTTGTCAGTTTACATCATGAAAACGGACTGATCTTGGCAGTGTGTGTGATATGAAAGTTAAGAGCTGATGAGTGACAGAGCTCCAAACCACAGAAAGTATAGAAAGGTTCATAACAGGATGTGGTCTGAGGTACTaccaactacttttttttttttttgctttcttgaGTTATGCCTGTAACAGACAGACTGTAAGTTTTACGAAATGTAAAAACATAAGTAAAACAGAAGCGCTTGGTatgtcattctttctttttttttttcttgcttgttttaatgtaaaGGTTGGAAAGCAAATGTTACCTGAAAAAAGTTATCTTCTAGTCACCAGCATACAATTACAGGAAGTATATGTGCGTGACATATACACACTTAATTCAACAGGAAGAGACTAAAGAATTAacaatataaaatgcatttatattttcacatttgtgtcatgcttattaatatttttattaaaaaaatcatcaCAATGTGCTTGAATAAATTAACAGGTTTAATCCTATACACCGA

Function

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-140106-76 Orthologous to human CYTIP (cytohesin 1 interacting protein).

Ensembl:

ensembl_id ENSDART00000088342

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00075290 lncRNA downstream 207148 5044975 ~ 5045989 (-) True XLOC_037603
TCONS_00073852 lncRNA downstream 209049 5043087 ~ 5044088 (-) False XLOC_037603
TCONS_00075289 lncRNA downstream 385698 4866100 ~ 4867439 (-) True XLOC_037602
TCONS_00075288 lncRNA downstream 711316 4539475 ~ 4541821 (-) False XLOC_037600
TCONS_00073839 lncRNA downstream 1301311 3931723 ~ 3951826 (-) True XLOC_037596
TCONS_00073869 lncRNA upstream 1150837 6414784 ~ 6502093 (-) True XLOC_037612
TCONS_00074961 lncRNA upstream 1267602 6531549 ~ 6548796 (-) True XLOC_037614
TCONS_00073887 lncRNA upstream 2093872 7357819 ~ 7359484 (-) True XLOC_037626
TCONS_00075291 lncRNA upstream 2235313 7499260 ~ 7505531 (-) True XLOC_037631
TCONS_00075292 lncRNA upstream 2677822 7941769 ~ 7942597 (-) True XLOC_037636
TCONS_00073850 mRNA downstream 206822 5040985 ~ 5046315 (-) False XLOC_037603
TCONS_00073849 mRNA downstream 206822 5040985 ~ 5046315 (-) False XLOC_037603
TCONS_00073851 mRNA downstream 207759 5042034 ~ 5045378 (-) False XLOC_037603
TCONS_00073847 mRNA downstream 396370 4733536 ~ 4856767 (-) False XLOC_037601
TCONS_00073848 mRNA downstream 396370 4741618 ~ 4856767 (-) True XLOC_037601
TCONS_00073854 mRNA upstream 7577 5271524 ~ 5318873 (-) True XLOC_037605
TCONS_00073855 mRNA upstream 61068 5325015 ~ 5337515 (-) False XLOC_037606
TCONS_00073856 mRNA upstream 62914 5326861 ~ 5337696 (-) False XLOC_037606
TCONS_00073857 mRNA upstream 62914 5326861 ~ 5337923 (-) True XLOC_037606
TCONS_00073858 mRNA upstream 81289 5345236 ~ 5351017 (-) True XLOC_037607
TCONS_00073841 other downstream 806033 4443918 ~ 4447104 (-) True XLOC_037598
TCONS_00073830 other downstream 1733426 3508318 ~ 3519711 (-) True XLOC_037592
TCONS_00073827 other downstream 1756558 3490831 ~ 3496579 (-) True XLOC_037591
TCONS_00073809 other downstream 2915834 2330861 ~ 2337303 (-) True XLOC_037575
TCONS_00073808 other downstream 2975645 2226463 ~ 2277492 (-) False XLOC_037574
TCONS_00073868 other upstream 1145210 6409157 ~ 6409271 (-) True XLOC_037613
TCONS_00073875 other upstream 1453730 6717677 ~ 6717801 (-) True XLOC_037618
TCONS_00073897 other upstream 2258488 7522435 ~ 7539023 (-) True XLOC_037632
TCONS_00073901 other upstream 2377813 7641760 ~ 7655301 (-) True XLOC_037633
TCONS_00073935 other upstream 4479612 9743559 ~ 9805319 (-) False XLOC_037657

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000367_00131770_00138127.mRNA False 1562 mRNA 0.46 8 CI01000367 131484 ~ 138374 (-)