RNA id: TCONS_00073852


Basic Information

Item Value
RNA id TCONS_00073852
length 496
lncRNA type retained_intron
GC content 0.44
exon number 3
gene id XLOC_037603
representative False

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 5040985 ~ 5046315 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGAAATGTAGTTAGGTTTTacatgtatataatttttttttcttttgctaagCGCACTTGTTACTCAGAAACATTCTGAATGTTTGCGTGATAAAATATCAAATGTTTCGTCATCTAATTGCATATGTTTTCCTTCTTTAGCGTACAGTACAGAAGAACGCCAAATATGTGTGTTTAGCCAATAAAAACTGTCCTGTGGATAAACGTCGGAGAAACAGATGTCAGTATTGCAGATTTCAGAAGTGCCTGGTGGTCGGGATGGTGAAAGAAGTTGTCCGGACCGACAACTTAAAGGGTCGTCGAGGCCGTTTACCCTCCAAACCCAAAAGTCCTCAGGAGTCTTCGCCCCCTTCTCCGCCAGTCAGTTTGATCAGCGCTCTGGTCAGAGCTCATGTGGACTCCAATCCCTCCATGAACAGCCTCGACTACACCAGATTCCAAGCCAACCCGGACTACCAACTGAGTGGAGATgacacacaacacatccagcaGTTCTA

Function

GO:

id name namespace
GO:0071542 dopaminergic neuron differentiation biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0001780 neutrophil homeostasis biological_process
GO:0021884 forebrain neuron development biological_process
GO:0071376 cellular response to corticotropin-releasing hormone stimulus biological_process
GO:0021953 central nervous system neuron differentiation biological_process
GO:0021954 central nervous system neuron development biological_process
GO:0045944 positive regulation of transcription by RNA polymerase II biological_process
GO:0005634 nucleus cellular_component
GO:0005667 transcription regulator complex cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0035259 glucocorticoid receptor binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0004879 nuclear receptor activity molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0003707 steroid hormone receptor activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-990415-184 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific; RNA polymerase II cis-regulatory region sequence-specific DNA binding activity; and glucocorticoid receptor binding activity. Acts upstream of or within dopaminergic neuron differentiation; forebrain neuron development; and neutrophil homeostasis. Predicted to be located in cytoplasm and membrane. Predicted to be integral component of membrane. Predicted to be part of transcription regulator complex. Predicted to be active in nucleus. Is expressed in brain; dopaminergic neurons; and retina. Human ortholog(s) of this gene implicated in Parkinson's disease. Orthologous to human NR4A2 (nuclear receptor subfamily 4 group A member 2).

Ensembl:

ensembl_id ENSDART00000149697

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00075289 lncRNA downstream 175648 4866100 ~ 4867439 (-) True XLOC_037602
TCONS_00075288 lncRNA downstream 501266 4539475 ~ 4541821 (-) False XLOC_037600
TCONS_00073839 lncRNA downstream 1091261 3931723 ~ 3951826 (-) True XLOC_037596
TCONS_00075285 lncRNA downstream 1647566 3358397 ~ 3395521 (-) False XLOC_037589
TCONS_00075290 lncRNA upstream 887 5044975 ~ 5045989 (-) True XLOC_037603
TCONS_00073869 lncRNA upstream 1370696 6414784 ~ 6502093 (-) True XLOC_037612
TCONS_00074961 lncRNA upstream 1487461 6531549 ~ 6548796 (-) True XLOC_037614
TCONS_00073887 lncRNA upstream 2313731 7357819 ~ 7359484 (-) True XLOC_037626
TCONS_00075291 lncRNA upstream 2455172 7499260 ~ 7505531 (-) True XLOC_037631
TCONS_00073847 mRNA downstream 186320 4733536 ~ 4856767 (-) False XLOC_037601
TCONS_00073848 mRNA downstream 186320 4741618 ~ 4856767 (-) True XLOC_037601
TCONS_00073846 mRNA downstream 288341 4730398 ~ 4754746 (-) False XLOC_037601
TCONS_00073844 mRNA downstream 436624 4538527 ~ 4606463 (-) False XLOC_037600
TCONS_00073853 mRNA upstream 209049 5253137 ~ 5263947 (-) True XLOC_037604
TCONS_00073854 mRNA upstream 227436 5271524 ~ 5318873 (-) True XLOC_037605
TCONS_00073855 mRNA upstream 280927 5325015 ~ 5337515 (-) False XLOC_037606
TCONS_00073856 mRNA upstream 282773 5326861 ~ 5337696 (-) False XLOC_037606
TCONS_00073857 mRNA upstream 282773 5326861 ~ 5337923 (-) True XLOC_037606
TCONS_00073841 other downstream 595983 4443918 ~ 4447104 (-) True XLOC_037598
TCONS_00073830 other downstream 1523376 3508318 ~ 3519711 (-) True XLOC_037592
TCONS_00073827 other downstream 1546508 3490831 ~ 3496579 (-) True XLOC_037591
TCONS_00073809 other downstream 2705784 2330861 ~ 2337303 (-) True XLOC_037575
TCONS_00073808 other downstream 2765595 2226463 ~ 2277492 (-) False XLOC_037574
TCONS_00073868 other upstream 1365069 6409157 ~ 6409271 (-) True XLOC_037613
TCONS_00073875 other upstream 1673589 6717677 ~ 6717801 (-) True XLOC_037618
TCONS_00073897 other upstream 2478347 7522435 ~ 7539023 (-) True XLOC_037632
TCONS_00073901 other upstream 2597672 7641760 ~ 7655301 (-) True XLOC_037633
TCONS_00073935 other upstream 4699471 9743559 ~ 9805319 (-) False XLOC_037657

Expression Profile

//