RNA id: TCONS_00073846


Basic Information

Item Value
RNA id TCONS_00073846
length 4842
RNA type mRNA
GC content 0.40
exon number 12
gene id XLOC_037601
representative False

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 4730398 ~ 4856767 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTGTGAAAATCAAGAAACCCATCAAGACGAAGTTCCGCATGCCCGTGTTCAATTGGGTGGCGCTGAAACCCAATCAGATCAATGGCACCGTCTTCAACGAGATCGACGATGAAAGAATACTGGAGGATCTGAATGTGGATGAGTTTGAGGAGATGTTCAAGACAAAAGCACAAGGTCCAGCCATAGACATCACCTCCAGCAAACAGAAGACCGCTCAGAAAGGACCACATAAAATCTCGCTGCTGGACGCCAACAGATCGAAAAACCTGGCCATCACCCTTAGGAAAGTGGGCAAGACATCAGAGGAGATCTGCAGAGGCATTCAATTaTTTGACTTGAGGACATTGCCGGTGGATTTCGTGGAGTGTTTGATGAGATTCATTCCATCGGAAGCGGAGCTGAAAGTTTTGCGGCAGTACGAAAAGGAGCGCAAGCCTCTGGAAAACCTGACAGACGAGGATCGCTTCATGATCCAGTTCAGCAAGATAGAGCGCCTCATGCAGAAGATGACCATTATGGCATTTGTGGGGAACTTTACAGAGAGCATTCAGATGCTCACGCcgCAACTTCATGCCGTCATTGCAGCCTCTGTCTCTATCAAGTCCTCACAAAAACTCAAGAAGATTCTGGAAATCATCTTAGCTCTGGGGAACTACATGAACAGCAGTAAAAGAGGAGCAGTGTATGGTTTCAAGCTGCAGAGCTTAGATCTGTTATTAGACACTAAATCAACAGACCGCAAGATCACTCTTCTGCACTACATAGCAAATGTAGTGAAGGACAAATACCAGCAGGTGTCGCTCTTCTATAACGAGCTTAACTATGTGGAAAAAGCGGCAGCTGTCTCTCTGGAGAATGTTTTATTAGATGTGAAGGAGCTTCAGCGAGGGATGGATCTGACCAGGAAAGAGTACAGCATGCATGGCCACAACACTCTGCTCAAAGACTTCATACAGCAAAACGAGAACAAACTCAAGAAACTGCAGGATGATGCCAAGATCGCTCAGGATGCCTTTGATGAGGTGGTGAAATTCTTCGGAGAAAACGCGAAAACGACGCCACCATCTGTATTTTTCCCAGTGTTTGTGCGCTTTGTGAAGGCGTACAGGCAAGCAGAGGAGGATAATGAACAGAAGAAGAGACACGAGCAGATGATGATGGAAAAGCTGATTGAGCAGGAGGCGATGGAGCAGGAGGATCAGAAGTCTCCCTCTCATAAGAATAAGCGTCAGCAGCAGGAGTTGATTGCAGAGCTGAGGAAAAAGCAGGTGAAGGACAGCAGACACGTGTATGAGGGTAAAGACGGAGCCATTGAGGACATCATCACAGCCTTAAAGAAGAATAATATTACTAAATTCCCCAATGTGCACTGGAGAGTAAGGAACTCTTCCAGTAGTACCCCAGTGGATGCTACTCAGACCTGGCAAGCATCTctctctttattattattatcattgttcatTCTGCTCCCTCCAACATTAGAGTTGCTTTCTTTTGACACTGAACATAGAAGCCATGTTCActttctgtctgtcattctatttAACACACATCAGGCGTCTTGAAGTTTGACCCTCAAGGGCCGAGGCTCCAGATCTGAGAAACCAACCTTACAGGCGCGCTGATGCCGTCAGGAGGAGTGTCCGGAGACGCTTTGATGATCCCAATTTGCGGCCTGTCAACAACGCAGAGATGGTCATGTGACGAGGGCGGAGTGAATGTAGTGAATGGAATGGAGGAGTTGACAGCTCCAGAACAACGTAATGAAGGACTGAAGATGACAGCAGGTCTGAAAGTCAAGTGCCTACACTTAACATCTGTCCAATCAGGTGTTGAATCAAACGTGTAACTGTCTTCTgtttgtaatttttgtttgttttatacgAAAAGTGTCTTGATCTGTCTTATATCTTAAATCGTAGATGGCGAGATCAGTGTTTCTCTTGAGAAGGTGTCAGAATGTTAAACTATTCCAACACTTGCATCATAAACCTGTACAAAAGCTGAAACATTTCAGTGCTTTCGCCACATCTGATCAATCTGGATGAGCGACTTTTTAAAGTCGACCTGAAATGGAAGTTAAGATTGTCTTGCATCCACTTGAAACAGTCCTGAAACGAGAAAAGAGTAGGCCGGTGCATGATTGGATTCATTGGTTTGTTGAAAGAATCAATGAGTTCAGAAATACTCATAGCCCCACTTTAAAGGAATTCCATGTGACCAGGAAGTGCAGATCAGTCGTTTTGAGGGGATGGGAAGGTTATAGTACTTGATTAAAGAACAAGAACTACTTACTGTatacagtgttggggagtaactgaATACATGTACCGGCGGTACGTATTTAGAATACTATTCATGAGTAACTTTATTCCGTTACAGTTACTATTTTTAAACAGGGTATTTAGAATACAGTTACTTTCCTAATACCATTGGAATACTTCGGCCCATGCATGTCTGGCCCATGATATTACTAAATTACCGCCGAAACCATAGAAACAGAAGCTACACTCCCGACTGCAAGTACCAGTGTTAACTCAGTGAGACTCACGCAAATGACCCTGTTCTCATGCTCTTACCTCCATTTTCTCACGCAGCAAAAGGGACGATCAGAAACACCGGACAACaaccatgttttttaaataaactgcttttTTTGCCATCATTGTCCGTGAatttgctgcttgatgtttcgTTTGCGCTTTCAGAGGTTTCGTTTACGCTTCTTAAATTTGCGTTTGCTTTTCTGACACATGTGGGCGGAACTTATGGGCACCTTAGCCAAAGTTGGCAGCCCTGGTTAACTTGAGTGTACAAATATGGAGGATTcagaccaggggtccgttcttcgtacgtggattactcagttagctggatttggatattaacgatttgacacgatcaaggatcgtttcgttcttcaaagctgatccgagagttgttgtcatggcaacagttctgctaggtcaaacctgatcgggagcaggtttaattcatataaacaggattagatcggcttagttcaagcaaagataatacagaaagtatttaccgaattctgatattttcttacagtagtacttatatacacttgggaaaataatacataatttttaaatatatatataaagttatagtcattaataaaataaataaagttatacatattaataaaacatatgcaatctgcaccctcgaaatgaaagtacaaagactgccatctggtgcaaagagaaaacttattgaaatgaactttttagatcgctttagaacaaattgtgtataatagaaatgcaaaatatgtgattttttttaagcaataatacatttatgcagtcataaacatgtttcgatagttaatatgccagtgatttgatgcttcacaaaagttgcagacgcctttaccaatatcaaaatgcttttgtaaacaaccagttattctttatacaccgattaaaaaacggctacattaataaagaaaatcttttctaaatgtagaactaaatgcattgatttgcattgaaatacatgatgaatactcttgtcttgacaaatgaaagtgtaaagcctgcagctcataacaaatgtggaaagttcttgcgtgtcatattaaacaaaacggttactgctaatttgatgtaattttgctcacatggataattgaatattaatcagatgatgtcattacgctgctatgccgtcagccaatcgttgcattgctgatcatgatttcgaggatcgatagatctgtccttcataacacacgcagcgatctcagatcagttcatccaaacattctaatctgattcgcgaacttgtttgaagaaccaaattagcgagagatcagttatcaagattaaaagatccaggatctgccaaatcatcttagatcatttaagcgaggtacgaagaacggaccccaggagcTCGAGGGGTTGGAGCTGCAACCGAAGCAACCTTCTAGCAGCAGGAAAAAATGCATTCACGTCTTGGAAGTTCAAgtattttttctctttaaagaATTAGAGGGGTGAGCGAAACCTGACAGTGCAGTGCAATCTCTGCCTGCCAGCTAACAACCTTAAAACAAAACTTGTTCATTTTGAggtttacatttttgtaaagcaAACACATTTTGCATTCTTCTAATATTTGCAATATTGTTCTTAGGTGAGACGTTTTTATAATAGAAATTAAAATAGATACGACCTGTTACATTACCTTGGTTTTACATAAACTATTTTgaagttttttcttttctttaatagACTTGAAGGCTGTTTTCAAGGGGAAGTATTCCAAGTGTTTATAATACAGTAACAGGATTAAGCAAAGTAACGGAATAtgttacaaaatacattttaaagcaggtATTCTGtaactaaatacatttacaactAAATACATACAATACATTTATTCTCCCCAACACTGACTGTATACATGTAAAAATAAGAAGAGGACATTTTGATTTGAAGGCGACTTTATGTTAGCTGAAACTGGCCACATTCcttgttgagaaaaaaatataatagagcATAAGAAAGGTTTAAGGAAGTTAAAGCTGTGTTGTAAAATGTTGATGGCTGGAGATGCTGCAGGTTGCGACACGGATATAAACAACATGAGCATTGTTGAAAGAAGATGGAGTGTAGGAGTGTTTGTATGTGTCGTATTATGAAAGACTTCAGGCAAGTAGGAGAAAGTTTAAGGAAAGGATTGATGTTGCTAAGGAAAATGTGAAATTATGAACTGGAGTATCTCGCATTTCTGGAAACAAGTCTAAATGAAGTGCTGTATGCAAATTACCTGATAAAAGTCGTGGATTCcacttgtaagagc

Function

GO:

id name namespace
GO:0022604 regulation of cell morphogenesis biological_process
GO:0016477 cell migration biological_process
GO:0007010 cytoskeleton organization biological_process
GO:0030866 cortical actin cytoskeleton organization biological_process
GO:0030036 actin cytoskeleton organization biological_process
GO:0008360 regulation of cell shape biological_process
GO:0016043 cellular component organization biological_process
GO:0005829 cytosol cellular_component
GO:0051015 actin filament binding molecular_function
GO:0003779 actin binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-081105-70 Predicted to enable actin filament binding activity. Predicted to be involved in cell migration; cortical actin cytoskeleton organization; and regulation of cell shape. Predicted to act upstream of or within actin cytoskeleton organization and regulation of cell morphogenesis. Predicted to be active in cytosol. Is expressed in several structures, including blood vessel; nervous system; neuroectoderm; optic cup; and polster. Orthologous to human FMNL2 (formin like 2).

Ensembl:

ensembl_id ENSDART00000133090

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00075288 lncRNA downstream 188577 4539475 ~ 4541821 (-) False XLOC_037600
TCONS_00073839 lncRNA downstream 778572 3931723 ~ 3951826 (-) True XLOC_037596
TCONS_00075285 lncRNA downstream 1334877 3358397 ~ 3395521 (-) False XLOC_037589
TCONS_00075289 lncRNA upstream 111354 4866100 ~ 4867439 (-) True XLOC_037602
TCONS_00073852 lncRNA upstream 288341 5043087 ~ 5044088 (-) False XLOC_037603
TCONS_00075290 lncRNA upstream 290229 5044975 ~ 5045989 (-) True XLOC_037603
TCONS_00073869 lncRNA upstream 1660038 6414784 ~ 6502093 (-) True XLOC_037612
TCONS_00074961 lncRNA upstream 1776803 6531549 ~ 6548796 (-) True XLOC_037614
TCONS_00073844 mRNA downstream 123935 4538527 ~ 4606463 (-) False XLOC_037600
TCONS_00073845 mRNA downstream 131515 4565622 ~ 4598883 (-) True XLOC_037600
TCONS_00073843 mRNA downstream 218785 4478199 ~ 4511613 (-) True XLOC_037599
TCONS_00073842 mRNA downstream 223579 4478199 ~ 4506819 (-) False XLOC_037599
TCONS_00073840 mRNA downstream 654778 4024250 ~ 4075620 (-) True XLOC_037597
TCONS_00073850 mRNA upstream 286239 5040985 ~ 5046315 (-) False XLOC_037603
TCONS_00073849 mRNA upstream 286239 5040985 ~ 5046315 (-) False XLOC_037603
TCONS_00073851 mRNA upstream 287288 5042034 ~ 5045378 (-) False XLOC_037603
TCONS_00073853 mRNA upstream 498391 5253137 ~ 5263947 (-) True XLOC_037604
TCONS_00073854 mRNA upstream 516778 5271524 ~ 5318873 (-) True XLOC_037605
TCONS_00073841 other downstream 283294 4443918 ~ 4447104 (-) True XLOC_037598
TCONS_00073830 other downstream 1210687 3508318 ~ 3519711 (-) True XLOC_037592
TCONS_00073827 other downstream 1233819 3490831 ~ 3496579 (-) True XLOC_037591
TCONS_00073809 other downstream 2393095 2330861 ~ 2337303 (-) True XLOC_037575
TCONS_00073808 other downstream 2452906 2226463 ~ 2277492 (-) False XLOC_037574
TCONS_00073868 other upstream 1654411 6409157 ~ 6409271 (-) True XLOC_037613
TCONS_00073875 other upstream 1962931 6717677 ~ 6717801 (-) True XLOC_037618
TCONS_00073897 other upstream 2767689 7522435 ~ 7539023 (-) True XLOC_037632
TCONS_00073901 other upstream 2887014 7641760 ~ 7655301 (-) True XLOC_037633
TCONS_00073935 other upstream 4988813 9743559 ~ 9805319 (-) False XLOC_037657

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU580279 True 3519 lncRNA 0.37 3 CI01000348 1016589 ~ 1020800 (-)