RNA id: TCONS_00075291


Basic Information

Item Value
RNA id TCONS_00075291
length 4134
lncRNA type antisense_over
GC content 0.39
exon number 3
gene id XLOC_037631
representative True

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 7499260 ~ 7505531 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

caaaaagttatgaattgccttgagattgcgttggacattaatattaggttagattgaggtctccagcatctaaggacaatgttgttttgatgtccaataaaaatgtgaaatgacgttgattttaggttgtattggaaagtgactgaaatccaacgtcgagccaacatcttaacccgtcattttgacgtcaaatactgacatttatttgccaggtttggcaaccaaaatccaacatctgatagacgtcatagtggtaacatccacacaacttcaagctgtaaccATTAGACGATCATATTTCGATGTTTTTGGGTTGCGTTGGACAGttaccaaaatgcaacgtctgttCGACATTGGACATTGACCTGATGTTGGGTACTGGCGTAAAAATCAAGgaactttgatGCCTTACCATGGCTGGAGCAGGCGTAGTGATACTATGCAGCCTAAAAATAGTCCCCTGCACCAAAATCTACACTTGGACAACCTGTTAGAATCTGCAAAATATCATTGCCCCTGCTGCAggcatggtacagcagcaaaaatccttgattattacgccggaATTAGTATAGTTCCTACCTATATCAGTCTAAAAAGAGCAACTTTAATTATCAGACTTAGCAAATACAAAAGAGTGAAGCTTTAAATAGAAGAAAAGATTgaattatttagttaattttcgagcaagatgctaatagtctaatctaattcagtgatctatgctaagctaagctaagctaatgtGCTCCTGTCAGAACCAGAGATGGCTAAATGGATTCAACAAAGGTAAAACTCAACTCCGTTTTCCAAATGGAGAGCTCCTTTAAGATTAACCTTGCAGCCACACTCGCAGGACGACAGACGCTTTCACACACCACACAAAACACTCCTTTTCTCTCTATTtctgcatgtacacacacacatactcggtCTGTATCTCCCTCCCGTCACTTTCCTTTTTATACGCATCTTTTTTTCTGTGAGATGCCCACCATTGTAAATCTCAGAAATCCTTCTTTAATCGCTTTCAAAAACTCTCTCAGAGGAGGCAAGGACACTTTAAAATCATCCACACGAAAGCCTTCAGTGTTCACAGTTACATCGCTAGGGCTCCTCTCAGTGCCTCGGCTCCTGAGATTTAGCTGGGAGTCACCTGAAAAGTCCCTGCTTACTTCTATATATAAGTCTTGAATGAAAATCAAAAGTTTGGAATAATTAAGAAGCTTTCatgggtttatttattttaaaactctgcattcatttgattaaaaatacagtaaaatctgtAATAcatgtgtattattatttttaaatgtaattaattttttattgtaaagatGAAATTTAGCATTAGCATTTAGCAGTGTCACACAATACTTCTGAAATCATCCTGACATAGTTTCTTATTATCTATGCTGCCTGCAATGTATAGCTTTTTCCCTACATTTACAAATTACTTACTTTAAATACCAGTTTgatgttcaccaaaaaaaaatgtGATCACATTCAGACCAGGCAgacaaaagatttaaaaaaataatacatttaataatagcTACAGAATTATACTTATGACTTGTGAATGGTTTGGAACttgaaataaattttatttaacagggacaacgGTTATTGATCCTGGTCTATTTGTAAACATCAAATCTATTTGCATATGTGGGGAACTAGTTACTCTTGTTGGACCTTTAACTAATTGgatacagttttttttctgatttattctCCCAGTTTATATTAAAATCCCCCATAATTAGCATATCTTgagggggcgaagcagtggcgcagtgagtagtgctgtcgcctcacagcaagaagatcgctgggttgctggttaaaacctcggctcagttggcatttctgtgaggagtttgcatgttctccctgcgttcgcgtgggtttcctccgggtgctccggttttcccccacagtccaaagacatgctgcaggtgaattgggtaggctaaattgtccgtagtgtatgagtgtatgagggtgacaggccggccggaatgtgtaataaagtcgttatcatatggacaagtctaaatggaggacttgttccaaaccgcCGACCCCGTAACCATActggactaaggccaaagaagaagatgATTGGCATATCTTTTGTGATCACGTTGCTTTAGAATTTTatcaatttgttttataaaaactcATTTGAAGAATACAGATGCAAAAACCCCTAAAAGCCGAATAAAGTTTCCTTTAAAAAATGAGCagttttatcaggctcctgtttGTAGGTTCGGCTATTTTAAGTTTATGGCAAAGAATGCACTCTTTTAAAGGTCTTACAAATGAAAACTCAACATAAGCataggagtctgagaaaaatgctcatttttgatggaaatttcagCAGCACTTAGAGGCTTTTTGCATCTGACTTTTTGCATCTGAGCTCTTCATATCAGCAGATGGTGGcctatacaaaaaaattatattaattgacAACAATTTGGCCAAATCACAAGACTCGTTTTAGATTCCTACATTTCCCAAGTCATCCATTTTAAGAAGGGGGTTTCATTTAGAATTTTATCATAGAATGATTTACTTGAAGAGGCCACTTACGCAGCATTATGAAACGTTGGCACCAGGGCCTGAAAGTATTTCAAGTTTTGGGGTTTGTAAACAAAGATTATTATGACATTTCTAAATATGCTGATAGCTTTTGATTAGTTTTGTCATGCAACTACTAGActggaaaaaaaactattcaaagatgattccttggatttactacactttttttaaggtaagtggttgtaaacaatttatttgggctgaatttaaacaaacaaatgaagttgaacatacattcattgtcttttcggcttagtaactttattaatctggggttgctacagcgaaataaattgccaacttatccagcatgtgttttatgcaacggatgcccttccagctgcaacccatctctgggaaacatccatacacactcacactcatacactacggacaatttagccaacccaattcgcctgtaccgcatatctttgttATTAATCTGTGGGTCATGTGCGTTCCGAACTGTGGGTTGGGATCAGTTACGTACCCCTAATATTTATATAGCTATATGTAATCTTTTCCCAAAGTTTCGAATACTTTGGCATCAaagaaataattgtttaaaaatatattaaattgtaaaaaaaagaagatgCACAATGTTACTGTATTTCAAATCAAGTAAACTATATACAGCTTTAATCATAACTATTCCAAACTTTTAATCTGTAGTGTAACCGAACACATAAAAGCAGGCTGAAAAACATGTATATCTACAGCAAAAATGCAATGGTGGCACTTTCCCCACATACATTGGCTAACAGATGCACAAATCATCATACTGTATGCTTGTGCAATGGGCTCAGATTAAACAGAGACTGAGTTCACCGAACACGGTTTGACAGATTTTGTGTAGGCCCTGACACAGAGCAGATAAAGCCTTTTGAAACAGTTACAAAAAACCACACACACTTCCCTGCCTGTGCTGTAAACATAAATGTTATCGAAAACATCTTTAAAAGGTCAGAAACCAACAGGAGGATTGAAGTCTAAATCTGTAAACTGGATATACGAAGAGTCTGTCTAGCAGAAGCCGTGCATGCTTTATGACACTTTAGTCCCTTAAAAGCCAAGGCCATATTTGGTCCCGCGTTCAGATGGAACATAATGGATTTTCTTTAAATCGGCCGCTGCTATAATGAGACCGCTCTTCTCGGACGGATTGAAACGGCAGCCTAATTAAGGGAAAGTTGCAGGCAAACATACCACAACCATCTTCAGCCATATAAAGTGGAGTTGAATGCGAGAGTCCTACTGTGGTTACATAACCACATGCTCTAGATTTCATCCGGCAGCAAAAGTTCTCGGAATGGTTCGTGCAGTGCAGTTCCTGTTGAGGAGAAGATATGAGGTCAACCTCTCACCACAGGGCCTGTGTGGGCTGTTAGGGGCACTTGGGAGCCGTAGTCATAGTCCAAATCGACAACGTGTGAGCCGCCAATCAAGCGCCCATGAGAGTATCCCCTTCTGTCGGCACGTCTGTCACGGAAGTTCTGGATGTAACTCTAA

Function

GO:

id name namespace
GO:0044085 cellular component biogenesis biological_process
GO:0042692 muscle cell differentiation biological_process
GO:0048731 system development biological_process
GO:0048468 cell development biological_process
GO:0022607 cellular component assembly biological_process
GO:0051146 striated muscle cell differentiation biological_process
GO:0034446 substrate adhesion-dependent cell spreading biological_process
GO:0022610 biological adhesion biological_process
GO:0007517 muscle organ development biological_process
GO:0007519 skeletal muscle tissue development biological_process
GO:0006936 muscle contraction biological_process
GO:0030154 cell differentiation biological_process
GO:0010927 cellular component assembly involved in morphogenesis biological_process
GO:0048513 animal organ development biological_process
GO:0000902 cell morphogenesis biological_process
GO:0000904 cell morphogenesis involved in differentiation biological_process
GO:0055001 muscle cell development biological_process
GO:0055002 striated muscle cell development biological_process
GO:0014866 skeletal myofibril assembly biological_process
GO:0043624 cellular protein complex disassembly biological_process
GO:0070831 basement membrane assembly biological_process
GO:0009888 tissue development biological_process
GO:0031032 actomyosin structure organization biological_process
GO:0031589 cell-substrate adhesion biological_process
GO:0048856 anatomical structure development biological_process
GO:1901879 regulation of protein depolymerization biological_process
GO:1901880 negative regulation of protein depolymerization biological_process
GO:0097435 supramolecular fiber organization biological_process
GO:0051261 protein depolymerization biological_process
GO:0030239 myofibril assembly biological_process
GO:0048869 cellular developmental process biological_process
GO:0032989 cellular component morphogenesis biological_process
GO:0050746 regulation of lipoprotein metabolic process biological_process
GO:0050748 negative regulation of lipoprotein metabolic process biological_process
GO:0030834 regulation of actin filament depolymerization biological_process
GO:0030835 negative regulation of actin filament depolymerization biological_process
GO:0006500 N-terminal protein palmitoylation biological_process
GO:0034329 cell junction assembly biological_process
GO:0034330 cell junction organization biological_process
GO:0008015 blood circulation biological_process
GO:0060254 regulation of N-terminal protein palmitoylation biological_process
GO:0071711 basement membrane organization biological_process
GO:0060262 negative regulation of N-terminal protein palmitoylation biological_process
GO:0003008 system process biological_process
GO:0003012 muscle system process biological_process
GO:0030029 actin filament-based process biological_process
GO:0003013 circulatory system process biological_process
GO:0003015 heart process biological_process
GO:0030036 actin cytoskeleton organization biological_process
GO:0061061 muscle structure development biological_process
GO:0032501 multicellular organismal process biological_process
GO:0032502 developmental process biological_process
GO:0060537 muscle tissue development biological_process
GO:0030042 actin filament depolymerization biological_process
GO:0060538 skeletal muscle organ development biological_process
GO:1903059 regulation of protein lipidation biological_process
GO:1903060 negative regulation of protein lipidation biological_process
GO:0014706 striated muscle tissue development biological_process
GO:0032535 regulation of cellular component size biological_process
GO:0007155 cell adhesion biological_process
GO:0060047 heart contraction biological_process
GO:0043242 negative regulation of protein-containing complex disassembly biological_process
GO:0043256 laminin complex cellular_component
GO:0042383 sarcolemma cellular_component
GO:0099080 supramolecular complex cellular_component
GO:0099081 supramolecular polymer cellular_component
GO:0045111 intermediate filament cytoskeleton cellular_component
GO:0043292 contractile fiber cellular_component
GO:0044430 obsolete cytoskeletal part cellular_component
GO:0044449 obsolete contractile fiber part cellular_component
GO:0062023 collagen-containing extracellular matrix cellular_component
GO:0005882 intermediate filament cellular_component
GO:0015629 actin cytoskeleton cellular_component
GO:0005604 basement membrane cellular_component
GO:0099512 supramolecular fiber cellular_component
GO:0005912 adherens junction cellular_component
GO:0030016 myofibril cellular_component
GO:0030017 sarcomere cellular_component
GO:0070161 anchoring junction cellular_component
GO:0030054 cell junction cellular_component
GO:0030056 hemidesmosome cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0030506 ankyrin binding molecular_function
GO:0005200 structural constituent of cytoskeleton molecular_function
GO:0051015 actin filament binding molecular_function
GO:0003779 actin binding molecular_function
GO:0008307 structural constituent of muscle molecular_function
GO:0044877 protein-containing complex binding molecular_function
GO:0008092 cytoskeletal protein binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00073887 lncRNA downstream 139776 7357819 ~ 7359484 (-) True XLOC_037626
TCONS_00074961 lncRNA downstream 950464 6531549 ~ 6548796 (-) True XLOC_037614
TCONS_00073869 lncRNA downstream 997167 6414784 ~ 6502093 (-) True XLOC_037612
TCONS_00075290 lncRNA downstream 2453271 5044975 ~ 5045989 (-) True XLOC_037603
TCONS_00073852 lncRNA downstream 2455172 5043087 ~ 5044088 (-) False XLOC_037603
TCONS_00075292 lncRNA upstream 436238 7941769 ~ 7942597 (-) True XLOC_037636
TCONS_00075293 lncRNA upstream 654810 8160341 ~ 8163995 (-) True XLOC_037637
TCONS_00075294 lncRNA upstream 778624 8284155 ~ 8286208 (-) True XLOC_037638
TCONS_00073916 lncRNA upstream 1503592 9009123 ~ 9024269 (-) False XLOC_037644
TCONS_00073915 lncRNA upstream 1503592 9009123 ~ 9024269 (-) False XLOC_037644
TCONS_00073894 mRNA downstream 54507 7423916 ~ 7444753 (-) True XLOC_037630
TCONS_00073893 mRNA downstream 54670 7410798 ~ 7444590 (-) False XLOC_037630
TCONS_00073892 mRNA downstream 54670 7410798 ~ 7444590 (-) False XLOC_037630
TCONS_00073891 mRNA downstream 78125 7410798 ~ 7421135 (-) False XLOC_037630
TCONS_00073890 mRNA downstream 104848 7394229 ~ 7394412 (-) True XLOC_037629
TCONS_00073895 mRNA upstream 10333 7515864 ~ 7539297 (-) False XLOC_037632
TCONS_00073896 mRNA upstream 10333 7515864 ~ 7539326 (-) False XLOC_037632
TCONS_00073898 mRNA upstream 116091 7621622 ~ 7640692 (-) False XLOC_037633
TCONS_00073899 mRNA upstream 129316 7634847 ~ 7655243 (-) False XLOC_037633
TCONS_00073900 mRNA upstream 135140 7640671 ~ 7652792 (-) False XLOC_037633
TCONS_00073875 other downstream 781459 6717677 ~ 6717801 (-) True XLOC_037618
TCONS_00073868 other downstream 1089989 6409157 ~ 6409271 (-) True XLOC_037613
TCONS_00073841 other downstream 3052156 4443918 ~ 4447104 (-) True XLOC_037598
TCONS_00073830 other downstream 3979549 3508318 ~ 3519711 (-) True XLOC_037592
TCONS_00073827 other downstream 4002681 3490831 ~ 3496579 (-) True XLOC_037591
TCONS_00073897 other upstream 16904 7522435 ~ 7539023 (-) True XLOC_037632
TCONS_00073901 other upstream 136229 7641760 ~ 7655301 (-) True XLOC_037633
TCONS_00073935 other upstream 2238028 9743559 ~ 9805319 (-) False XLOC_037657
TCONS_00073936 other upstream 2264804 9770335 ~ 9805319 (-) True XLOC_037657
TCONS_00073961 other upstream 3340387 10845918 ~ 10846549 (-) True XLOC_037667

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU198803 True 3334 lncRNA 0.39 2 CI01000037 1751814 ~ 1755182 (+)