RNA id: TCONS_00073867


Basic Information

Item Value
RNA id TCONS_00073867
length 4797
RNA type mRNA
GC content 0.42
exon number 4
gene id XLOC_037612
representative False

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 6393368 ~ 6502491 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTCGTTTTGACAGAGATTACCTCAaattaataacatatttattcattttccttcagcttagtttctttattaatcaggagtcgccacagtggaatgaaccgataactttttcagcatatgttttactggaTGCATGAATAACTATTAATGATTAAAACATTCTACAATTTGATTGTCCTGCTCTTATGCATGTGATAAAATCTGCTTGCTTCCAAACTTTCATTAGTACATTGTAACTAAACTTTGAGTATTTGATGAGctcctccatcatcatcatcatcatcatcagaagtGTCGCGCGCCTCCCTCCGCGCTCTCGCTGTGCCATGGCAGCGGTGACGTCACCCGTGCATTGACTCGCGCTGGCGGCGGAGAGCGAGAGCTTGAACAGACCGAGGGTTGGAGAGAGGAGAGGAGCAGCCTGGGCCCCGCggaccataaataaataaacaaaaactaaacccAAACGGATTTACCTTCGCTTCGCTTTATCCTACCAATCCAAGTCTGCAAAGAGAGCGTGTTTTCAGCGCGATTTGAAGCCCGATCTGTCAGGAGTTACAGCAAGtGGGACTCGATGAAAGATGACAGAGGAGGTGATTGTTATAGCCAAGTGGGACTACACAGCTCAGCAAGACCAGGAACTGGACATCCGGAAGAACGAGCGGCTCTGGTTACTGGATGATTCCAAAACCTGGTGGAGAGTGCGTAACGCATCCAACCGCACTGGCTACGTCCCCTCTAATTACGTGGAGCGCAAGAACAGTCTGAAGAAAACCTCACTAGTGAAGAACCTGAAGGACACTCTCGGACTGGGCAAAACGAAAAGGAAGACCAGTGCTCGTGATCCATCTCCCACACCCAGCACAGAAGCAGAATATCCATCCAATGGCAGCGCAGGAGGAGGCGGAGGGGGCGGAGCTGAACGAATTTATGACCTGAACATTCCGGCATTGGTGAAGTTCTCTTACGCAGCCGAGCGGGACGATGAACTCAACCTCGTCAAAGGGGAGAGGGTGGTCGTCATGGAGAAGTGCAGCGATGGCTGGTGGAGGGGTAGCCATGCTGGCCGTGTCGGCTGGTTCCCGTCTAACTACGTCCAAGAGGAAGTGGGATACACGGACAACGATGGGGTGTTCGGGGACACCGTGGGGGGGTTCCGGTCGTTGAAGGTGGGGCAAGGTTCAGCAATGGCCAACGGCCGGCCGGGGGGCTCTGGGAGCTCCGTTCTGCATGTGGTTCAGACTCTGTACCCCTTCAGCTCAGTCACAGAGGAGGAACTAAACTTTGAGAAGGGTGAGACTATGGAGGTTTTGGAAAAGCCCGAGAATGACCCGGAGTGGTGGAGGTGTAAAAACAGCCGCGGAATAGTAGGCCTTGTGCCTAAGAACTATGTGGTAGTGCTTGATGACGGGCCGGTAGCAAAGGGCTTAGGGTCAAGTCATGGATCCCCTCACATCAGTCACACAGTGCCCTCGCGTGTAGGAAAATTTGCTGGAAAGGGCTGGTACTATGGTAATGTGACACGGCACCATGCAGAGTGTGCGCTTAATGAGAGAGGAGTGGAAGGAGACTTCCTTATACGGGACAGTGAGTCGTCGCCCAGTGACTTCTCCATTTCTCTGAAAGCTGTGGGAAAGAACAAGCACTTCAAGGTGCAGCATCAGGACGGAGTGTACTGCATCGGTCAGCGGCGTTTCAGCAGTATGGATGAGCTTGTAGAGCACTACAAGAAAGCGCCCATCTTTACCAGTGAACAAGGAGACAAACTCTACCTTGTCAAGGCCCTTGGctaaatctgacttttttttccctCAACAAACATTACCTCTTTTCCTCTTTCGTCTATCTTTTTGTTTCCTGCACACTCCTGACATAGGATTCCTTCTTAAGCATTGACATTTCAGATCCCTACATTGCCTCGACTCTTGTAGGGAGCAGTAGCAACTTTAAACAAAGATGTCCGTCCTTGATAACCGTGTCCGATTTTGAAGGTTTATAGATAAATGATGTAAAGACAATGCCGTTTTCACAGCCACTTTTCGGCTCTTCCTGCTTTCAAGCTGGTTAATCCCCAACCTCAAGCCACATTACGTTAGTTTACATTCTTCTGCCCCAAAGAGAATCGCAGTATGTACCTTTGTAGCTCCTGTTCTGAATGGATTCATGTGTGTGATTCTTGATACTGACGGCCTGGAAAAGAACAAGGAGTGATTTTGGTTCCCAAAGGATTGCCATTCCATTCACAGGAGAGTTCGTCTGAAGATCACCCAAACATCTCAGTGTGTATACACTGTCAAAGTAACACATAGGATGACAGTCAGATTTCACCCTGTATTAAATCGGTGCTGTCCCATCTTCTGAGCCTTTACACTGTTTTTTGCATCTACAGTCCGTCCAGCATTAATAAAAGGAAGTGTTTGGATTTACCTACACAGCTTTCCAGGTATTCCTCCTGGATCCGAGTCACTTCAGGGTTTCTTCAGTATCAGGGTACTTCATAAAGGGAGATCAATGCTGCGGAGACTGGGATAAAGAGAGGAGCTGTAGcttgtaagagagagagagagggtagtTTCAGAGTTTTGAATGTGTGTCCTTTCAACCAAATGTGCCACCCCACTTCCAGTTCTGCTACTATTGATGTCTTATCGCACCTCACCAACTCTGCTCTCAGTAACACACCGTTGATTGTGAACACTAATTCAAGAGtaatacaaacaaacatgttgattttatttctttacgtTATGTTAGTTGCTCTGTTTACCAATAAGCCTGTTGGTCAAGgggttttcagattttttttttttttaagtctatttGTCTGAATGTTATTGAGCAATGTTATTTAATTCCTCTTTCcactgtatgtacatatatatatatattatattaaagaaaaaaaagatatggTGCATATATATGAATCGTTTAGATCCAGCATTATGGTACTGTATTGAGGACAGTGTGGTGAGAATTGAAATACTTTTGTTCAATAAAAGTTTTGCAGAATAAGTTAAAAGGACCTTCTGAGTTGTGGCTTTTCTTAACGTATATATCACAATAGAACTATGTGGATTTCTAATTTACGGAGAATGaatgtacaaaatatatatttcatctGTCATGTGTGCAGTTGACCAATAGATGTCACTAACTGACAGCTCTGGAAAAAGGAAAAAGTACAAGGAAACTTTCTGTTCATAAATATACTGTCGAAATcataattattaaccccctgaattttaagccccccccccccccctttttattttttttcccaatttttgtttaacNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNtgataaaaaaacaacaatatttcgttaaagtgtaataataataataacaataaactttACAACGCAAAAACATTACACACATATATTAATAccgctgttctgtgtcagtttaatcagttgactgttgaaattcaaagttttaacccaactggtcgagttattaagaaataacctaataaaggttaaacaaataacccaacaaagcaccaaatatgtttaactcaactattgggttaattaaataactaactCAACGTTTTTTAGTGTAGAAAAAattccattgtgctctgcatacAAATACCTGCAGTTGAAGAAATCTCATTGTGCTCTGTCTGTCAGGTGTTCCAGCTCACAGGGAGATCAGGGAAAAGAGGAGCGTCCCATACTGGAATCTGTGGTCATCTGACTTCTATGGTTGGGTGGACGTGCTGCGTTCTCAGAGCGGATATGACACACTTCTGGACTTGGCAAGAAACTACTGGGCTCACTATCCCGTTGCTGGTGTTCTAGGTTACGGAAGCACCCCAGGCCAAACAGACGGTCCAGAACTGGAAGTTGAAGATTTAAAATAACACTGTCCTTCCCCACTGGGCTTCCTCTACGTACCCTTTCATTAGCTGTCTGGATTTTATCTACtgcaatattgtgcatgttttttCCTTGTTGTGCATTCTCTTATGGGCTTTTCACCAAAAGAGAATCCTTTCCACAGGTTTAGTTTACTCAGCCTTTTGTTCTTGCAAAATAACTGTCCGCACAAATGATCCGTGTGATTCAGAGATGCCTGTTGTCAGTTTCACATTAAGTATACCAGTTTTGTAACCGAATTTCGAATTGTAAGTGCAACAATAAATGCATTCTATGAAAGACTTTTAAAGCTGTTTCATAATTGCATTATGAATGTCTaatggggtgacatggtggctcagtggttagcactgttgcctcacagcaagaaggttgctggttcgagtcccggctgggtcagttggcattttatcATCATGTTAAAATAgatgggttaaaaataccccaacatataacccaactagattattatagcaccttcccaactatgggttattttaacccaatgcattgggttattttgattaaatgtaatttttttttccattctggtattactattgctactattaccagtactactattaatttttataattaagactgtgtaaataatacatacaatattcaaaaatattgaaaatgttttttttccgcTGCATTTCAGTTCCTGACACTTTTGTCGAAATAAATCAAcaatcacaaacaatgaagaaacagatCAAAGTGCAGACAGTTATAAACTGTGCAAGCAGAACATTATGTGTTGACGGAGCAGCATTTTAGCCACATCCAAATGCTttctaaaag

Function

GO:

id name namespace
GO:0006417 regulation of translation biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0005737 cytoplasm cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-686 Predicted to enable receptor tyrosine kinase binding activity and signaling adaptor activity. Predicted to be involved in several processes, including cell migration; regulation of response to endoplasmic reticulum stress; and regulation of translation. Predicted to act upstream of or within actin filament bundle assembly; barbed-end actin filament capping; and regulation of translation. Predicted to be located in cytosol and endoplasmic reticulum. Is expressed in rhombomere 3 and rhombomere 5. Orthologous to human NCK2 (NCK adaptor protein 2).

Ensembl:

ensembl_id ENSDART00000102672

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00075290 lncRNA downstream 1347379 5044975 ~ 5045989 (-) True XLOC_037603
TCONS_00073852 lncRNA downstream 1349280 5043087 ~ 5044088 (-) False XLOC_037603
TCONS_00075289 lncRNA downstream 1525929 4866100 ~ 4867439 (-) True XLOC_037602
TCONS_00075288 lncRNA downstream 1851547 4539475 ~ 4541821 (-) False XLOC_037600
TCONS_00073839 lncRNA downstream 2441542 3931723 ~ 3951826 (-) True XLOC_037596
TCONS_00074961 lncRNA upstream 29058 6531549 ~ 6548796 (-) True XLOC_037614
TCONS_00073887 lncRNA upstream 855328 7357819 ~ 7359484 (-) True XLOC_037626
TCONS_00075291 lncRNA upstream 996769 7499260 ~ 7505531 (-) True XLOC_037631
TCONS_00075292 lncRNA upstream 1439278 7941769 ~ 7942597 (-) True XLOC_037636
TCONS_00075293 lncRNA upstream 1657850 8160341 ~ 8163995 (-) True XLOC_037637
TCONS_00073866 mRNA downstream 12715 6371926 ~ 6380653 (-) True XLOC_037611
TCONS_00073865 mRNA downstream 20833 6371919 ~ 6372535 (-) False XLOC_037611
TCONS_00073864 mRNA downstream 185301 6118362 ~ 6208067 (-) True XLOC_037610
TCONS_00073862 mRNA downstream 476613 5893608 ~ 5916755 (-) False XLOC_037609
TCONS_00073863 mRNA downstream 476675 5898659 ~ 5916693 (-) True XLOC_037609
TCONS_00073870 mRNA upstream 105023 6607514 ~ 6618067 (-) True XLOC_037615
TCONS_00073871 mRNA upstream 121045 6623536 ~ 6624663 (-) True XLOC_037616
TCONS_00073872 mRNA upstream 156103 6658594 ~ 6661665 (-) False XLOC_037617
TCONS_00073873 mRNA upstream 156208 6658699 ~ 6661657 (-) False XLOC_037617
TCONS_00073874 mRNA upstream 156208 6658699 ~ 6661666 (-) True XLOC_037617
TCONS_00073841 other downstream 1946264 4443918 ~ 4447104 (-) True XLOC_037598
TCONS_00073830 other downstream 2873657 3508318 ~ 3519711 (-) True XLOC_037592
TCONS_00073827 other downstream 2896789 3490831 ~ 3496579 (-) True XLOC_037591
TCONS_00073809 other downstream 4056065 2330861 ~ 2337303 (-) True XLOC_037575
TCONS_00073808 other downstream 4115876 2226463 ~ 2277492 (-) False XLOC_037574
TCONS_00073875 other upstream 215186 6717677 ~ 6717801 (-) True XLOC_037618
TCONS_00073897 other upstream 1019944 7522435 ~ 7539023 (-) True XLOC_037632
TCONS_00073901 other upstream 1139269 7641760 ~ 7655301 (-) True XLOC_037633
TCONS_00073935 other upstream 3241068 9743559 ~ 9805319 (-) False XLOC_037657
TCONS_00073936 other upstream 3267844 9770335 ~ 9805319 (-) True XLOC_037657

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000037_02378066_02392175.mRNA True 2127 mRNA 0.48 5 CI01000037 2378066 ~ 2392871 (+)