XLOC_037627 (slc23a3)


Basic Information

Item Value
gene id XLOC_037627
gene name slc23a3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 7371962 ~ 7378566 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00073888
CCCCTGCTGTCTGGAAGAAGTGTTGCAGCAGGACTGGCTGGAGGTCTGTCTGCCAGCATGAGTTCTCCAGCTGTGTATGTGTTGTGTGCTCGGCTGCTGAAGGCTCCAGTTCCCCCCGCTCATGCCTGTAACAGGGGCCTGTGTGTGGACGGACTGGGCAGTGTGTTCGCTGGGCTGATGGGGGCGCCGGTAGGACTGTGCAGCAGTGCGTCTAATGCATGTGTTATTGGGCTCAGCCAGTCTGGGTCCAGAAGCACAGTGCAGCTCGCCGGCGTCTCGCTGTTAATTTTGGGATTGTCTCCTCAGTTAGCTCAGATGCTCTGTTCAGTCCCTTTGGCCATCCATGGTGGGAGTGCTGTGCTTAGTGTAACCTACGCACTTGCTGTAGCAACAGGCATAACGTACTTCCAACATGCTGATGTGGACTCAGGACGCAACATCTTTAACATCGGCTTTACAATGTTCATGTCATTAGCACTGCCGCACTGGTTCAGACTTCACTCTGGATTTATACAAACAGGTGTTGGCAGTGTTGACGTTTTTCTTCAGTCTCTTTTAACCTTACCTGTTTTTCTTGTGGGAGTCTTGGCTTTTCTTCTAGAGCACACGGTTTCAGGGACTTTGCCTGAAAGGGGTCTTGTGCGACAAGAAGGCACAAAGAAGATTCAGTCTTTCGCTGATCAGCAACAGGGATACAGTCACAGTCCAGACCCGGTGTATGATCCACCTGCACCTGTGATGAAAGTTCTGAACCTGACCGGCTTCAGAACCGTCCTCTTCTGTGCCTGCAGGACTCACACCGTTGAAGAAGTGCTGGTGACAGAACCTGAGATGTCTAGCTTATTACCTGATAAAGATACTGGTGCCTGCAATGGCTGATTTTTTGCAGCTCGGTccatattttatttgaattttcaaaatgtatttatctT

Function

symbol description
slc23a3 Predicted to enable transmembrane transporter activity. Predicted to act upstream of or within transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human SLC23A3 (solute carrier family 23 member 3).

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0022857 transmembrane transporter activity molecular_function
GO:0005215 transporter activity molecular_function

KEGG:

id description
ko02000 Transporters

ZFIN:

id description
ZDB-GENE-070912-714 Predicted to enable transmembrane transporter activity. Predicted to act upstream of or within transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human SLC23A3 (solute carrier family 23 member 3).

Ensembl:

ensembl_id ENSDARG00000088891

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00073888 True 932 mRNA 0.50 5 7371962 7378566

Neighbor

gene id symbol gene type direction distance location
XLOC_037626 BX942813.1 coding downstream 12478 7357819 ~ 7359484 (-)
XLOC_037625 mitd1 coding downstream 84587 7275185 ~ 7287375 (-)
XLOC_037624 si:ch211-121j5.4 coding downstream 114085 7240896 ~ 7257877 (-)
XLOC_037623 creg2 coding downstream 133123 7228083 ~ 7238839 (-)
XLOC_037622 mgat4a coding downstream 158190 7091028 ~ 7213772 (-)
XLOC_037628 slc23a3 coding upstream 11641 7390207 ~ 7390388 (-)
XLOC_037629 slc23a3 coding upstream 15663 7394229 ~ 7394412 (-)
XLOC_037630 bin1a coding upstream 32232 7410798 ~ 7444753 (-)
XLOC_037631 NA coding upstream 120694 7499260 ~ 7505531 (-)
XLOC_037632 desma coding upstream 137298 7515864 ~ 7539326 (-)
XLOC_037618 BX842683.1 non-coding downstream 654161 6717677 ~ 6717801 (-)
XLOC_037614 NA non-coding downstream 823166 6531549 ~ 6548796 (-)
XLOC_037613 FQ377643.1 non-coding downstream 962691 6409157 ~ 6409271 (-)
XLOC_037602 NA non-coding downstream 2504523 4866100 ~ 4867439 (-)
XLOC_037636 NA non-coding upstream 563203 7941769 ~ 7942597 (-)
XLOC_037637 NA non-coding upstream 781775 8160341 ~ 8163995 (-)
XLOC_037638 NA non-coding upstream 905589 8284155 ~ 8286208 (-)
XLOC_037644 BX537313.1 non-coding upstream 1630557 9009123 ~ 9024269 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000037_01807429_01814912 NA coding CI01000037 null 1807429 ~ 1815500 (+)