RNA id: TCONS_00073888


Basic Information

Item Value
RNA id TCONS_00073888
length 932
RNA type mRNA
GC content 0.50
exon number 5
gene id XLOC_037627
representative True

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 7371962 ~ 7378566 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CCCCTGCTGTCTGGAAGAAGTGTTGCAGCAGGACTGGCTGGAGGTCTGTCTGCCAGCATGAGTTCTCCAGCTGTGTATGTGTTGTGTGCTCGGCTGCTGAAGGCTCCAGTTCCCCCCGCTCATGCCTGTAACAGGGGCCTGTGTGTGGACGGACTGGGCAGTGTGTTCGCTGGGCTGATGGGGGCGCCGGTAGGACTGTGCAGCAGTGCGTCTAATGCATGTGTTATTGGGCTCAGCCAGTCTGGGTCCAGAAGCACAGTGCAGCTCGCCGGCGTCTCGCTGTTAATTTTGGGATTGTCTCCTCAGTTAGCTCAGATGCTCTGTTCAGTCCCTTTGGCCATCCATGGTGGGAGTGCTGTGCTTAGTGTAACCTACGCACTTGCTGTAGCAACAGGCATAACGTACTTCCAACATGCTGATGTGGACTCAGGACGCAACATCTTTAACATCGGCTTTACAATGTTCATGTCATTAGCACTGCCGCACTGGTTCAGACTTCACTCTGGATTTATACAAACAGGTGTTGGCAGTGTTGACGTTTTTCTTCAGTCTCTTTTAACCTTACCTGTTTTTCTTGTGGGAGTCTTGGCTTTTCTTCTAGAGCACACGGTTTCAGGGACTTTGCCTGAAAGGGGTCTTGTGCGACAAGAAGGCACAAAGAAGATTCAGTCTTTCGCTGATCAGCAACAGGGATACAGTCACAGTCCAGACCCGGTGTATGATCCACCTGCACCTGTGATGAAAGTTCTGAACCTGACCGGCTTCAGAACCGTCCTCTTCTGTGCCTGCAGGACTCACACCGTTGAAGAAGTGCTGGTGACAGAACCTGAGATGTCTAGCTTATTACCTGATAAAGATACTGGTGCCTGCAATGGCTGATTTTTTGCAGCTCGGTccatattttatttgaattttcaaaatgtatttatctT

Function

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0022857 transmembrane transporter activity molecular_function
GO:0005215 transporter activity molecular_function

KEGG:

id description
ko02000 Transporters

ZFIN:

id description
ZDB-GENE-070912-714 Predicted to enable transmembrane transporter activity. Predicted to act upstream of or within transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human SLC23A3 (solute carrier family 23 member 3).

Ensembl:

ensembl_id ENSDART00000144003

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00073887 lncRNA downstream 12478 7357819 ~ 7359484 (-) True XLOC_037626
TCONS_00074961 lncRNA downstream 823166 6531549 ~ 6548796 (-) True XLOC_037614
TCONS_00073869 lncRNA downstream 869869 6414784 ~ 6502093 (-) True XLOC_037612
TCONS_00075290 lncRNA downstream 2325973 5044975 ~ 5045989 (-) True XLOC_037603
TCONS_00073852 lncRNA downstream 2327874 5043087 ~ 5044088 (-) False XLOC_037603
TCONS_00075291 lncRNA upstream 120694 7499260 ~ 7505531 (-) True XLOC_037631
TCONS_00075292 lncRNA upstream 563203 7941769 ~ 7942597 (-) True XLOC_037636
TCONS_00075293 lncRNA upstream 781775 8160341 ~ 8163995 (-) True XLOC_037637
TCONS_00075294 lncRNA upstream 905589 8284155 ~ 8286208 (-) True XLOC_037638
TCONS_00073916 lncRNA upstream 1630557 9009123 ~ 9024269 (-) False XLOC_037644
TCONS_00073884 mRNA downstream 84587 7275185 ~ 7287375 (-) False XLOC_037625
TCONS_00073886 mRNA downstream 84834 7275186 ~ 7287128 (-) False XLOC_037625
TCONS_00073885 mRNA downstream 84834 7275186 ~ 7287128 (-) True XLOC_037625
TCONS_00073883 mRNA downstream 114085 7240896 ~ 7257877 (-) True XLOC_037624
TCONS_00073882 mRNA downstream 133123 7228083 ~ 7238839 (-) True XLOC_037623
TCONS_00073889 mRNA upstream 11641 7390207 ~ 7390388 (-) True XLOC_037628
TCONS_00073890 mRNA upstream 15663 7394229 ~ 7394412 (-) True XLOC_037629
TCONS_00073891 mRNA upstream 32232 7410798 ~ 7421135 (-) False XLOC_037630
TCONS_00073893 mRNA upstream 32232 7410798 ~ 7444590 (-) False XLOC_037630
TCONS_00073892 mRNA upstream 32232 7410798 ~ 7444590 (-) False XLOC_037630
TCONS_00073875 other downstream 654161 6717677 ~ 6717801 (-) True XLOC_037618
TCONS_00073868 other downstream 962691 6409157 ~ 6409271 (-) True XLOC_037613
TCONS_00073841 other downstream 2924858 4443918 ~ 4447104 (-) True XLOC_037598
TCONS_00073830 other downstream 3852251 3508318 ~ 3519711 (-) True XLOC_037592
TCONS_00073827 other downstream 3875383 3490831 ~ 3496579 (-) True XLOC_037591
TCONS_00073897 other upstream 143869 7522435 ~ 7539023 (-) True XLOC_037632
TCONS_00073901 other upstream 263194 7641760 ~ 7655301 (-) True XLOC_037633
TCONS_00073935 other upstream 2364993 9743559 ~ 9805319 (-) False XLOC_037657
TCONS_00073936 other upstream 2391769 9770335 ~ 9805319 (-) True XLOC_037657
TCONS_00073961 other upstream 3467352 10845918 ~ 10846549 (-) True XLOC_037667

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000037_01807429_01814912.mRNA True 2355 mRNA 0.46 12 CI01000037 1807429 ~ 1815500 (+)