XLOC_037633 (dnajb2)


Basic Information

Item Value
gene id XLOC_037633
gene name dnajb2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 7621622 ~ 7655301 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00073898
GGTCAGAGAAAATGGCCAAGAGAGAACAGAGGTTGAGGAGGACGGGGTTCTGAAAAGTGTCCTCATCAATgGTGTGGAGGACGAGATGGCTTTAGCTCTGGAACTGAGTCGCAGAGAACAGTCCAGTGAGCCGCCCAGACAGTCCCATCAGCCACTGCTCCGCCCCAACAATCACAGCTCTCCAAACCCAGCTTTACGATCCTACAGCGCTGCCCCGTTCTACCACTGCCCCAGTGCCAACGAAGACGAGGAAGATGAAGACCTGCAGATGGCGCTGGCCTACAGCTTATCGGAGATGGATGCACAGCAGCGGGCAGAGGACATGATCTCAGAGTTCGACTTCCAGGCCTCCACAGGCTGATCTGTGGCTGTGACTTCTCTTACCCCcagagGTGACGTGTTTCCCGGTGCTCAGctctgtctttctgtctctctctgagTTTCTGCCTGGCACACCTGCTGCTCAGACCCTTTTCAAagttttatttggaaaaaaaacccAGGCAACACTACATAAAGGTCAATAATGTATgtgctatgtatgtgtgtttgtgtatgaatgtgtgctcAGCCTTGGAGGGGGAACACTGGATTacttttcatatacagttgaagtcagaattattagcccccctttgattttatttatttatgtatttattttttaaatatttcccaaattatgtttaccagattcaggaaatgtttacagtatgtctgataatattttttcttctggagaaag
>TCONS_00073899
ATTCACAGCCGAGAGAGACTAGGACGGACACATATAGAAGTTGAGGTTCGGTTACAACCCAACGCAATGAAGCGCGCTGTGCCGTCGGTAAACGGGTGATTCTGACGGAACTCCGTAGCAATTTCACGCGCACGTTACCAGAGCGTCAGTTCCTGTGATCCGCGTCTTGGGAGTCGGACGGACTGTCGCTCCCCTGGCTTCATACCACAGAGGCTCAGCTCCTCCTGTCTGGATATACTTCTAAAAAAGGTGCTGAAGTAAGCTGAAGGGCGCGATGGTGGACTACTATGATGTTCTGGGAGTGTCACGAAGTGCTTCTCCAGATGACATCAAGAAAGCTTACAGAAAACTGGCTCTGCAGTGGCATCCCGACAAAAACCCAGACAACAAGGAGGAGGCGGAGAAAAAATTCAAGGAGATAGCAGAGGCCTACGAAGTTCTTTCAGACAAGAGCAAGCGAGATGATTACGACAGATATGGTAGATCAGACATGCCAAGTTCTGGCTCAGGTAGCTCAGGTTCATTTCCTGATGACTTCCCAGGATTCACCTTCACATTCCGCAGTCCAGATGAGGTGTTTCGAGAGTTCTTCGGAGGGCAGGACCCATTCGCTGACTTTTTCGATGATTTCCCATTTGGTGGAATGCACAGTGGTTTTCACAGTTCCTCCAGACTTGGGCCCAGTCGCTTCTTCTCCTTTCCCTCAGCAAATGCTGATTTCACCTCCTTCTCGTCTTCACTGGGTGGGATGGGCAGCATGGGAGGGGCAAACTTTAAGTCTGTTTCTACTTCCACCCGTGTTGTCAATGGAAAACGTCTCACCACAAAAAAGGTCAGAGAAAATGGCCAAGAGAGAACAGAGGTTGAGGAGGACGGGGTTCTGAAAAGTGTCCTCATCAATgGTGTGGAGGACGAGATGGCTTTAGCTCTGGAACTGAGTCGCAGAGAACAGTCCAGTGAGCCGCCCAGACAGTCCCATCAGCCACTGCTCCGCCCCAACAATCACAGCTCTCCAAACCCAGCTTTACGATCCTACAGCGCTGCCCCGTTCTACCACTGCCCCAGTGCCAACGAAGACGAGGAAGATGAAGACCTGCAGATGGCGCTGGCCTACAGCTTATCGGAGATGGATGCACAGCAGCGGGCAGAGGACATGATCTCAGGTGCCGGGGGAGGAAGAGGGAGGATCTCAGGTGCCGTGGGAGGGAAAGGGGGGAAATCAGGTGACGGGACGGGAGGTgttcaaataaatcaaaacatgaGAGAGGAAACGGATGAATCAGATCAAAACACTCCTTCGTCTCCTGAGGACAGACTAACAGAACAGGGTCTGGCTAAGGGTTCAGAAGCTGTTATTGTGCAGGACAGGGAGAATGATAAAATGGCAGCCAATGGGACTAATGTGGTAAAAAAGCGAAGGAAGTGTCAGTGTGTTGTCTGTTAGGAGGAGTATGGAGGTTAATAGTATTTGTGTGTGCAATTAGCAGTGCTAACTCTACGTTTTTGCTCTTTTTCACTATTCTTTCTGTAGTTTTGGATTGTGCTTTAAGTTCAGTCTCTTGTGCCTTTGTGCAAGGATGACCGTTctgagtttatatattttttgccttGAGATATGTGCAACAAGTGCCAAAATGGGTTTATTTTCCACAAAGACAGGATGTTTTAAGGTACTATGTGCAATAGTTTAGAGAGACAAGCATGAAATATCCTGCGACCCGACAGATGTCACTGAAATTGGTGTCTTGGGATGTCATTTGCCAGCCTTGACTCTGCAAACAGTTAAAAATGGTCCGATTGCTTTTAGGCCAATCAGAAACCATTATGGCCTGTGAATCTCCTGGCGTCAGCTTGGCTGACATGTCTTTGAAGGGTGCCATTTTGGGATATTGGAAAGCAGTGGTAAGGTTAGCAACATGGCGAAAGTAACATAATGGCTCAAATCGTTTagaacatttttaaatccattaatGAGCATGACTTATTACTAGGGCCAGAAGGTATTTCCgggcattttttgctatttctgctgagaatttgctgaagatctgcagatttatgcggagtGATTTTGGGAGAGTCATAATAAACTTAATatactgtatcaaataaaaaaa
>TCONS_00073900
GCTGAATGAACACAGATCCCTGATTGTGATAAGGTGACTAACTGACATTAAACAACAGGTGCTGAAGTAAGCTGAAGGGCGCGATGGTGGACTACTATGATGTTCTGGGAGTGTCACGAAGTGCTTCTCCAGATGACATCAAGAAAGCTTACAGAAAACTGGCTCTGCAGTGGCATCCCGACAAAAACCCAGACAACAAGGAGGAGGCGGAGAAAAAATTCAAGGAGATAGCAGAGGCCTACGAAGTTCTTTCAGACAAGAGCAAGCGAGATGATTACGACAGATATGGTAGATCAGACATGCCAAGTTCTGGCTCAGGTAGCTCAGGTTCATTTCCTGATGACTTCCCAGGATTCACCTTCACATTCCGCAGTCCAGATGAGGTGTTTCGAGAGTTCTTCGGAGGGCAGGACCCATTCGCTGACTTTTTCGATGATTTCCCATTTGGTGGAATGCACAGTGGTTTTCACAGTTCCTCCAGACTTGGGCCCAGTCGCTTCTTCTCCTTTCCCTCAGCAAATGCTGATTTCACCTCCTTCTCGTCTTCACTGGGTGGGATGGGCAGCATGGGAGGGGCAAACTTTAAGTCTGTTTCTACTTCCACCCGTGTTGTCAATGGAAAACGTCTCACCACAAAAAAGGTCAGAGAAAATGGCCAAGAG
>TCONS_00073901
GTTCTGGAATGGCTCTGTTTTCAGACTGACTGCAGCTAAGCTGATTGTGACGCACCGCATTCACAGCCGAGAGAGACTAGGACGGACACATATAGAAGTTGAGGTTCGGTTACAACCCAACGCAATGAAGCGCGCTGTGCCGTCGGTAAACGGGTGATTCTGACGGAACTCCGTAGCAATTTCACGCGCACGTTACCAGAGCGTCAGTTCCTGTGATCCGCGTCTTGGGAGTCGGACGGACTGTCGCTCCCCTGGCTTCATACCACAGAGGCTCAGCTCCTCCTGTCTGGATATACTTCTAAAAAAGTTACAGAAAACTGGCTCTGCAGTGGCATCCCGACAAAAACCCAGACAACAAGGAGGAGGCGGAGAAAAAATTCAAGGAGATAGCAGAGGCCTACGAAGTTCTTTCAGACAAGAGCAAGCGAGATGATTACGACAGATATGGTAGATCAGACATGCCAAGTTCTGGCTCAGGTAGCTCAGGTTCATTTCCTGATGACTTCCCAGGATTCACCTTCACATTCCGCAGTCCAGATGAGGTGTTTCGAGAGTTCTTCGGAGGGCAGGACCCATTCGCTGACTTTTTCGATGATTTCCCATTTGGTGGAATGCACAGTGGTTTTCACAGTTCCTCCAGACTTGGGCCCAGTCGCTTCTTCTCCTTTCCCTCAGCAAATGCTGATTTCACCTCCTTCTCGTCTT

Function

symbol description
dnajb2 Human ortholog(s) of this gene implicated in distal spinal muscular atrophy type 5. Orthologous to human DNAJB2 (DnaJ heat shock protein family (Hsp40) member B2).

GO: NA

KEGG:

id description
ko04141 Protein processing in endoplasmic reticulum
ko03110 Chaperones and folding catalysts

ZFIN:

id description
ZDB-GENE-061013-537 Human ortholog(s) of this gene implicated in distal spinal muscular atrophy type 5. Orthologous to human DNAJB2 (DnaJ heat shock protein family (Hsp40) member B2).

Ensembl:

ensembl_id ENSDARG00000058644

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00073898 False 745 mRNA 0.47 4 7621622 7640692
TCONS_00073899 False 2117 mRNA 0.47 9 7634847 7655243
TCONS_00073900 False 662 mRNA 0.48 8 7640671 7652792
TCONS_00073901 True 705 processed_transcript 0.50 6 7641760 7655301

Neighbor

gene id symbol gene type direction distance location
XLOC_037632 desma coding downstream 82296 7515864 ~ 7539326 (-)
XLOC_037631 NA coding downstream 116091 7499260 ~ 7505531 (-)
XLOC_037630 bin1a coding downstream 176869 7410798 ~ 7444753 (-)
XLOC_037629 slc23a3 coding downstream 227210 7394229 ~ 7394412 (-)
XLOC_037628 slc23a3 coding downstream 231234 7390207 ~ 7390388 (-)
XLOC_037634 tuba8l3 coding upstream 7337 7662638 ~ 7673856 (-)
XLOC_037635 si:ch73-199e17.1 coding upstream 22835 7678136 ~ 7684002 (-)
XLOC_037636 NA coding upstream 286468 7941769 ~ 7942597 (-)
XLOC_037637 NA coding upstream 505040 8160341 ~ 8163995 (-)
XLOC_037638 NA coding upstream 628854 8284155 ~ 8286208 (-)
XLOC_037626 BX942813.1 non-coding downstream 262138 7357819 ~ 7359484 (-)
XLOC_037618 BX842683.1 non-coding downstream 903821 6717677 ~ 6717801 (-)
XLOC_037614 NA non-coding downstream 1072826 6531549 ~ 6548796 (-)
XLOC_037613 FQ377643.1 non-coding downstream 1212351 6409157 ~ 6409271 (-)
XLOC_037644 BX537313.1 non-coding upstream 1353822 9009123 ~ 9024269 (-)
XLOC_037645 NA non-coding upstream 1371082 9026383 ~ 9050515 (-)

Expression


Co-expression Network