XLOC_037650 (zgc:113337)


Basic Information

Item Value
gene id XLOC_037650
gene name zgc:113337
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 9322424 ~ 9348058 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00073925
GAGTGTGTTGTGTTTGTACAGCTGAGAGCGGAGGGCATCGACACTACACAGAGATGGCAGCCCTTCAGTAAGATGTTGGAAAAGACCCCAACTGATAAAAATCATCACCTTCACATTCATCCCGCATTCAAACTCTCCTGGACTGTTAAATGCCCTCTCAATACAAAGGGCTAAAATGTTTGTGGTCTCCATGCCAAGATGTCTACAGATTTGTGTGTCTTTGGTAATGGTGTCCCGACTACAAGGCAGGGTTTCAGCTCCAGCACGCCTGGAGGCTCTTGTTGAACAGCCCTTCACGCTGAGCTGTACGCTTGTCAAGGCTAGAGGAGAATCAGTGCATCAGATCCGCTGGCTGGATGTGCAGAATCAGACATTAATCTCCTATCAGCCTGGTCAACAAGACAGCGTGAGCGGTCAACAGCATGTGGAGCTCGCTGCTTCTCCAAGAGACGCCAGCGCTATCACTATTAAACGTGTAAGCCATAGGGACGAGGGATGTTACACTTGCATCTTCGATATTCTTCCTAAAGGCTCAAGGGAAGGGCAGACTTGTCTTACAGTTACAGCAACTGTGATTCCAGAGGGCAATAAGACTGCAGTGGGTGGAAAACAAATCACTCTGGCCTGTCGGTACGGCCTGCCagagaaagtcaaacaggttttgtGGAAGAAGATTGTGACTAAAGCAGAATCCCGTGAAATTGCGTTTTTTGCAAAGCAGAGTGATCCTGTGATAGAAGAAGAGTTTGTGGAGCGTGTGAGTCTGAGTCCTTCCCTGTCTGACACACAGCTCACGCTGTGGCCAGTCCAATCCGAAGATGAGGCCTGCTACACCTGTGAGTTTCACACATACCCGGATGTCATAAAGAGCGCCACCAGCTGCCTTACTGTGTTTGTCCTGCCTAAACCTCAAGTAAGCTACAAGACCACATCGCCAGGAGTGATCGAGGCGAACTGTACAGCTGTGGCCCGACCAAAGGCTGAAATAGTGTGGAATGTGGAGGGGAATGACAGAACCATCGGTCCACCTGTGACCATCGATGTCCAGCAGAGTGACGGGACGACTCTGGTCATCAGCACCTTGACCATCCAGGCCGGACTCCTGAAGGACGTCTCCGTCAAATGTCTGGTTCATCATAAAGGACTGGAGACGGCCATTGCTGTTTCCATGAACACTAAAAttggcaCAGCTCTTGCCATCCTGATCTCTGTGACTACAGTTGCTTTTCTACTGGTCCTCTGCCTGTGTTTCTGTTTGTGGAAGTGTGTCCTGCGCAAGGATGAGCCTGAAGAGCATCAGCTACCGAGAAGAAGCCGAGAAAACAGAGAAGCAGACAGCTGAATAATCGTTCTGATTGTGGCAGACTAAAGCTGCAGTTTTCTTTACAATACGAATTTGCTGAGACACCCGTGAAGATGAAAATCTCTTGTCATCAAGTTCCCTACATTTCCTGCCAAAGAAAACCAGTGACACATCTCTACACGAGGAAAGATGACACATTTCCAACAATTTGTGAATCTATCACTAATATAAAGTTTGCAGGACAGAGGCCAATTTAATTAccattaatttgttttaatattggCATCTATAACTTGTAACTAGCTATTCACTCATAGAAAAAGTAAGAACATTTCAGATATAATTATTGTAAGTAATTACAATGCTACCACAAATTCCAGTGACTTTTGTAAATAGTATGGTTTTGTTGTATCTTTCCTGATGCTAATGTTATGATCAAATAGATTCA

Function

symbol description
zgc:113337 Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in neural crest.

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-050306-20 Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in neural crest.

Ensembl:

ensembl_id ENSDARG00000041998

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00073925 True 1751 mRNA 0.46 9 9322424 9348058

Neighbor

gene id symbol gene type direction distance location
XLOC_037649 NA coding downstream 33354 9286419 ~ 9289070 (-)
XLOC_037648 si:ch211-214p13.3 coding downstream 39905 9251466 ~ 9282519 (-)
XLOC_037647 u2af1 coding downstream 79647 9230446 ~ 9242777 (-)
XLOC_037646 cbsb coding downstream 93483 9180620 ~ 9228941 (-)
XLOC_037645 NA coding downstream 271909 9026383 ~ 9050515 (-)
XLOC_037651 AL954142.4 coding upstream 7314 9355372 ~ 9370866 (-)
XLOC_037652 si:ch211-214p13.9 coding upstream 62951 9411009 ~ 9415000 (-)
XLOC_037653 si:ch211-214p13.9 coding upstream 67602 9415660 ~ 9419704 (-)
XLOC_037654 gsk3ba coding upstream 229685 9577743 ~ 9671244 (-)
XLOC_037655 gpr156 coding upstream 327868 9675926 ~ 9705512 (-)
XLOC_037644 BX537313.1 non-coding downstream 298155 9009123 ~ 9024269 (-)
XLOC_037638 NA non-coding downstream 1036216 8284155 ~ 8286208 (-)
XLOC_037637 NA non-coding downstream 1158429 8160341 ~ 8163995 (-)
XLOC_037663 NA non-coding upstream 1020322 10368380 ~ 10370625 (-)
XLOC_037667 BX000444.1 non-coding upstream 1497860 10845918 ~ 10846549 (-)
XLOC_037671 NA non-coding upstream 2223254 11571312 ~ 11572354 (-)
XLOC_037673 NA non-coding upstream 2247929 11595987 ~ 11655031 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000037_04192977_04199859 NA coding CI01000037 null 4192772 ~ 4201415 (-)