XLOC_037671


Basic Information

Item Value
gene id XLOC_037671
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 11571312 ~ 11572354 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00075298
TATGATAACGACGAATCACACGCCACACGCACAATGCCTGCAGATGAAAGGGTTTTGTTCGTTCGGCTCGCGTTACGCAGATGCAGACACTCGGCAGGAAAACAGCAGAGCAGCGGCGGCACTCATCACTACTGTTGTCCCGCTGTTTACTGGAGCTTTAACACATGGAAACTATCAGTACAATGTGTTAAAACACAGTACAATGTGTTGATTTGCTTTGAGGAATGACTACTTGTGAAACTATAGGATTATAATATAAGATAGGCCTACAAATGTCGCGGTTATATCGTGTGTTATGAATTCACGAATTATGCTTATTGTTTTTACCAGTGGCACTTATACTGTCTGCAAGGGTATATCATTTTATGTATTGTCTTATTTAATAATGTTAccttatttgtgtaataaattTAGCCTacaaaattcttgagtttttttaggacagctttattgttttttgtttaattaacttaaaattgttttaagttaacttaagttaacttaattaatttgcatTGGAAGGACATTTTGTGCactcattatttatattttttgctcattcaaactacttaattaaaatgagctgaaaaacacaattcttcagatttCATGGGAcaagttaattgttttatgttcaatccacaaatttgttaaaaatgttaagttaacttaatttgtgttgggacaacatgaatgaaatgtgtggaactctgcattttcTCCAGTGTATATTCAGACAATTAAAG
>TCONS_00075299
CAGAGCTGCGCGCGCTGGAGACACAGAGCAGATCAATGCGTTCAACACACCGACACTATAAAGCCAAAGGCCGCAGGTCTGTGCTCATCAGCAGTAGGCTACAGCTATGATAACGACGAATCACACGGGGCAATATCAGAAGCTTAACTCTGCTAACGAACTAATGAATGGACGTAAAGGATGGATGTTAATTGTGTTTTCTGTACTTGTCTCACGTTGAGCCACACGCACAATGCCTGCAGATGAAAGGGTTTTGTTCGTTCGGCTCGCGTTACGCAGATGCAGACACTCGGCAGGAAAACAGCAGAGCAGCGGCGGCACTCATCACTACTGTTGTCCCGCTGTTTACTGGAGCTTTAACACATGGAAACTATCAGTACAATGTGTTAAAACACAGTACAATGTGTTGATTTGCTTTGAGGAATGACTACTTGTGAAACTATAGGATTATAATATAAGATAGGCCTACAAATGTCGCGGTTATATCGTGTGTTATGAATTCACGAATTATGCTTATTGTTTTTACCAGTGGCACTTATACTGTCTGCAAGGGTATATCATTTTATGTATTGTCTTATTTAATAATGTTAccttatttgtgtaataaattTAGCCTacaaaattcttgagtttttttaggacagctttattgttttttgtttaattaacttaaaattgttttaagttaacttaagttaacttaattaatttgcatTGGAAGGACATTTTGTGCactcattatttatattttttgctcattcaaactacttaattaaaatgagctgaaaaacacaattcttcagatttCATGGGAcaagttaattgttttatgttcaatccacaaatttgttaaaaatgttaagttaacttaatttgtgttgggacaacatgaatgaaatgtgtggaactctgcattttcTCCAGTGTATATTCAGACAATTAAAG
>TCONS_00073973
TGTACTTGTCTCACGTTGAGCCACACGCACAATGCCTGCAGATGAAAGGGTTTTGTTCGTTCGGCTCGCGTTACGCAGATGCA

Function

GO:

id name namespace
GO:0006883 cellular sodium ion homeostasis biological_process
GO:0071805 potassium ion transmembrane transport biological_process
GO:0036376 sodium ion export across plasma membrane biological_process
GO:0098659 inorganic cation import across plasma membrane biological_process
GO:0070884 regulation of calcineurin-NFAT signaling cascade biological_process
GO:0140115 export across plasma membrane biological_process
GO:0015672 monovalent inorganic cation transport biological_process
GO:0106056 regulation of calcineurin-mediated signaling biological_process
GO:0030007 cellular potassium ion homeostasis biological_process
GO:0098739 import across plasma membrane biological_process
GO:0006813 potassium ion transport biological_process
GO:0099587 inorganic ion import across plasma membrane biological_process
GO:1990573 potassium ion import across plasma membrane biological_process
GO:0005391 sodium molecular_function
GO:0022857 transmembrane transporter activity molecular_function
GO:0005215 transporter activity molecular_function
GO:0008556 potassium transmembrane transporter activity, phosphorylative mechanism molecular_function
GO:0008597 calcium-dependent protein serine/threonine phosphatase regulator activity molecular_function
GO:0015079 potassium ion transmembrane transporter activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDARG00000080708

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00075298 False 746 lncRNA 0.34 2 11571312 11572249
TCONS_00075299 False 945 lncRNA 0.37 2 11571312 11572354
TCONS_00073973 True 83 miRNA 0.52 1 11571973 11572055

Neighbor

gene id symbol gene type direction distance location
XLOC_037670 cryba2b coding downstream 10880 11554089 ~ 11560432 (-)
XLOC_037669 fev coding downstream 19608 11548233 ~ 11551704 (-)
XLOC_037668 chpfa coding downstream 308084 11245962 ~ 11263228 (-)
XLOC_037667 BX000444.1 coding downstream 724763 10845918 ~ 10846549 (-)
XLOC_037666 si:ch1073-416j23.1 coding downstream 766081 10781687 ~ 10805231 (-)
XLOC_037672 umps coding upstream 4148 11576502 ~ 11587070 (-)
XLOC_037673 NA coding upstream 23633 11595987 ~ 11655031 (-)
XLOC_037674 zc3h15 coding upstream 92443 11664797 ~ 11676491 (-)
XLOC_037675 NA coding upstream 250025 11822379 ~ 11855305 (-)
XLOC_037676 znf804a coding upstream 334416 11906770 ~ 12034444 (-)
XLOC_037663 NA non-coding downstream 1200687 10368380 ~ 10370625 (-)
XLOC_037651 AL954142.4 non-coding downstream 2200446 9355372 ~ 9370866 (-)
XLOC_037649 NA non-coding downstream 2282242 9286419 ~ 9289070 (-)
XLOC_037645 NA non-coding downstream 2520797 9026383 ~ 9050515 (-)
XLOC_037677 NA non-coding upstream 504489 12076843 ~ 12171785 (-)
XLOC_037688 NA non-coding upstream 1317544 12889898 ~ 12903013 (-)
XLOC_037689 NA non-coding upstream 1373203 12945557 ~ 12948957 (-)

Expression


Co-expression Network