XLOC_037668 (chpfa)


Basic Information

Item Value
gene id XLOC_037668
gene name chpfa
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 11245962 ~ 11263228 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00073962
AGGAAGGTGATACAGTTTCAGGAAAGGATAACATTCAATGCGTTTCCGCTAGTATTTGAACCGCTTTCTTGATGTTCGCTACTCTGCCGAGAAGGTCGCGCTTAAAGGAGGTGTGCGTCGCACCAGCAGTAGGGGTACAATGAGGTTCTCTATGTTGATCAGTCTGTTAAGGCCGATCGGCCCGGTTATTATCGGGATTTCGCTGGGATTTACTCTGAGTTTGCTGAGTGTGAGCTGGGTTGAAGAGAGCTGTGATGTTAATGCCGTAGGAGACGAAGGAATCGCTTTAAACCAGGATGGAAGTCTGAAAGGAGCCCGAAGACCAAACTCTATTTCCACTGGGAAtgatggtgaggaggaggagaaggaggattTCCCGCCGAGAATAATCCCGTATAAACCAGTCAAACAGACTCAGCCCAAGAAACTTTTCAGAGCGAAATACATCAGCACAGAGCTGGGAATCCGAGAGCGTCTTTTTGTGGGAATAATAACCTCCAAAAACACTATCAACACCCTGGGTGTAGCTGTCAACCGCACCATTGGCCATCATCTGGACAATGTCGTGTTCTTCACTGGCACCCGAAACCGCAAGATACCCCATGGGATGAATGTGGTCACACATGGTGATGAACGGCTTATCTGGAACATGTTCCAGACCATCAAGTACATTCTAGAACATTACATCACTGAGTACGACTGGTTCTACCTCGCCCAGGATGACACGTATACACAGGCGGACCGCATCAAGGCTCTTGTGGGGCACTTGAGCATGGACCGGGTGCTGTATATGGGTAGTCCGGAGGAGTTCATTGGAGGTGAGATGCAGGGACGGTATTGCTATGGGGGGTTTGGATACCTGCTGTCCCGCAGTCTACTGCTGAAGCTCCAGCCCTTCCTGGAAAACTGCAGGAACGATATTCTCAGCGCCAGACATGACGAGTGGCTTGGCCGATGCATCATCGATTATGCTAATACCAACTGCGTGGAAGAATTTGAGGGACAGcggtattattattatgaaatgggcaaaaattctgACCCTAGTAAAGAAGATAACGTGCAGTTCAAGAATGCACTGACCGTCCACCCAGTGTCTGATCCTGAGCAGATGTACAGACTCCACAAACACTTCACCGAGATTGAGCTGCGGAAGACATACGAGGAGATCGAAAAACTGCAGGCGGAAATTAGAAATGTCAGTGTAGTGGCTTTTGAGGGCAACCGCAGTGCTTTGTGGCCAGTTGGAATCAATCCACCCTTTGAGCCCAAAACACGATTCGAGGTCCTGCGGTGGGATTACTTCACTGAGGATCAGGTTTACTCTTGCATCGATGGCTCTCCGAAATGCGAGCTTCGTGGAGTTGACAAGCTAGACGTAGCCGATGTCATTGAGACAGCAATGGGTGAACTGAATAAAAAGTACAAGCCTGTGTTGTACCTAAAGAAGCAACAGCTAATCAATGGATACAGACGTTTTGACCCCACCAGAGGTATGGAGTACACCCTGGACCTACAATTGGAGGTAGTTAACCAAAAAGGACACAGTCGCTCTATTACCAAGAGGGTCCACTTAGTAAGACCTCTCAGTCGCATCGAGATCATCCCTATGCCTTACGTTACAGAAGCAACTAGAGTTCATATCATCTTACCCGTTACTCTTCAAGATCGAGATTACGTTCATCAGTTTTTAGAAGTGTATGCCACAAATGCATTCGAAACCAGCGAGAATGCGATCTTGACGTTCCTCTTCATCTACGATCCAATAGAGGCCCAACAAGTCAACCAGAATGACATCTTCTCCAGCATCAAAGCACAAATCAGTACGTACGAACATCGATATCCTGCAGTCAAAATCCCCTGGATTAGTGTTAAAAGCGAAAGTCCGTCTCAAATCAAATTCATGGACATCATCTCCAAGAAGCACCCGGTTGACACGTTGTTCTTCATTGCGACGGTAAAAACAAGCATCAGTTCAGAGTTCCTCAATCGCTGTCGGATGAACTCCATCAACAACTGGCAGGTGTTCTTTCCAATCCACTTCCAGTACTACAATCCTGACATCGCTTATCACAACCAGCCTCTTCCCAGTGCGTTGGATTTGGTCAAAGAGGCTGGTCTTTTCGATCGCAGCTCCTTCACCGAAGCTTGCTTCTATAACTCGGACTACATGGCGACCCGTACCCGGATGTCATCGGATGTGCTGGAGAATGAGGAGATCCTGGAGAACCTTGATATCTATGACATGTTCGTCAAATACTCTGGCCTCCATGTTTTCCGAGCAGTGGAGCCGGCCCTGCATCAGAAATACAGCTACCAAACGTGTAATCCTCGCCTTAGTGAAGAAATCTACCAGAGGTGTGTACAAAGCACCCTGGATAGCCTTGGATCACGCTCTCAGCTCGCCATGCTGCTGTTTGAACAGGAACAGGGCAACAGTACTTAAAACCAAACCCTGAAGATTGA

Function

symbol description
chpfa Predicted to enable glucuronosyl-N-acetylgalactosaminyl-proteoglycan 4-beta-N-acetylgalactosaminyltransferase activity. Predicted to be involved in chondroitin sulfate biosynthetic process. Predicted to be located in Golgi cisterna membrane. Predicted to be integral component of membrane. Is expressed in several structures, including brain; cranial cartilage; mesoderm; proctodeum; and shield. Orthologous to human CHPF (chondroitin polymerizing factor).

GO:

id name namespace
GO:0030206 chondroitin sulfate biosynthetic process biological_process
GO:0032580 Golgi cisterna membrane cellular_component
GO:0005794 Golgi apparatus cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0016740 transferase activity molecular_function
GO:0047238 glucuronosyl-N-acetylgalactosaminyl-proteoglycan 4-beta-N-acetylgalactosaminyltransferase activity molecular_function
GO:0008376 acetylgalactosaminyltransferase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-100504-2 Predicted to enable glucuronosyl-N-acetylgalactosaminyl-proteoglycan 4-beta-N-acetylgalactosaminyltransferase activity. Predicted to be involved in chondroitin sulfate biosynthetic process. Predicted to be located in Golgi cisterna membrane. Predicted to be integral component of membrane. Is expressed in several structures, including brain; cranial cartilage; mesoderm; proctodeum; and shield. Orthologous to human CHPF (chondroitin polymerizing factor).

Ensembl:

ensembl_id ENSDARG00000078392

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00073962 True 2466 mRNA 0.48 4 11245962 11263228

Neighbor

gene id symbol gene type direction distance location
XLOC_037667 BX000444.1 coding downstream 399413 10845918 ~ 10846549 (-)
XLOC_037666 si:ch1073-416j23.1 coding downstream 440731 10781687 ~ 10805231 (-)
XLOC_037665 CABZ01053619.1 coding downstream 467347 10778227 ~ 10778615 (-)
XLOC_037664 tmbim1b coding downstream 476865 10758339 ~ 10769097 (-)
XLOC_037662 thsd7ba coding downstream 713371 10152820 ~ 10532591 (-)
XLOC_037669 fev coding upstream 285005 11548233 ~ 11551704 (-)
XLOC_037670 cryba2b coding upstream 290861 11554089 ~ 11560432 (-)
XLOC_037671 NA coding upstream 308084 11571312 ~ 11572354 (-)
XLOC_037672 umps coding upstream 313274 11576502 ~ 11587070 (-)
XLOC_037673 NA coding upstream 332759 11595987 ~ 11655031 (-)
XLOC_037663 NA non-coding downstream 875337 10368380 ~ 10370625 (-)
XLOC_037651 AL954142.4 non-coding downstream 1875096 9355372 ~ 9370866 (-)
XLOC_037649 NA non-coding downstream 1956892 9286419 ~ 9289070 (-)
XLOC_037645 NA non-coding downstream 2195447 9026383 ~ 9050515 (-)
XLOC_037675 NA non-coding upstream 559151 11822379 ~ 11855305 (-)
XLOC_037677 NA non-coding upstream 813615 12076843 ~ 12171785 (-)
XLOC_037688 NA non-coding upstream 1626670 12889898 ~ 12903013 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000036_01250575_01252253 CHPF coding CI01000036 null 1249796 ~ 1252643 (-)