CI01000036_01250575_01252253 (CHPF)


Basic Information

Item Value
gene id CI01000036_01250575_01252253
gene name CHPF
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000036
NCBI id null
chromosome length 2115676
location 1249796 ~ 1252643 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000036_01250575_01252253.mRNA
ACTTTCTGTCTTTCAGCACATCATTGTAACGCCTCCTACATCCTTTTATATAGCAGAGCTCTTGCAGGGCCAAAATTGGAAGCATTTACTTTGCTTAAAAATCATTTGTTGAGACCTGGAGCAAGCGTTCAGAAGAAATCAAGTACCTCCTCTGAACAATGATTTCCAATGGAATACACCAATATTGATACAGATAAGTGTTAGATGTGTTAGATTATGGCAAAAGGTAATCTAAATGTAAAAATGGTAGCAATGAGCATGCGCAATTAAACACACTAATGCACACTAATTGACATTTGAAATAAAAACCTCTCACTAACAATACTTTATTTTTATTTGTGTGTTTTTTTTTTTTTTTTTTTTCAGGGGCAGAAGTATTATTATTATGAAATGGGAAAAAATTCTGACCCTAGTAAGGAAGATAATGTGCAGTTTAATAATGCACTGACTGTCCATCCGGTGTCTGATCCTGAGCAGATGTACAGACTTCACAAACACTTCACTGAGATCGAGCTGCAGAAGACATACGAGGAGATCGAAAAACTGCAGGCGGAAATAAAAAATGTGAGCGTGGTGGCTTTTGAGGGCAACCGTAGTGCCTTGTGGCCAGTAGGAATCAATCCACCCTTTGAGCCCAAAACACGTTTCGAGGTCCTGCGGTGGGATTACTTTACCGAAGATCAGGTATACTCTTGCATTGATGGCTCTCCAAAGTGTGAGCTTCGTGGAATCGATAAGCTGGACGTAGCTGACGTCATTGAGACGGCTATGGGTGAGCTGAACAAGAAGTACAAGCCGGTTCTGCACCTGAAGAAGCAGCAGCTTATTAACGGATACAGGCGCTTTGACCCCACCAGAGGGATGGAGTACACCCTGGACCTACAGCTGGAGGTGGTTAACCAGAAAGGACATAGTCGCTCCATCACCAAGAGGGTTCACCTGGTGAGGCCTCTCAGTCGTATTGAGATCATCCCCATGCCTTATGTTACAGAAGCAACTAGAGTCCACATCATCTTACCCGTCACTCTTCAAGACCGAGAGCATGTTCAACAGTTTTTGGAAGTATACGCCACAAATGCGTTCGAAACCAGCGAGAATGCCATCTTGACATTTCTCTTTATCTACGATCCAATTGAAGCCCAACAAGTCAACCAGAATGACATCTTCGCCAGTGTCAAAGCGCAAATCAATGCTTATGAGCACCGCTATCCTACGGTCAAAATCCCCTGGATCAGCGTGAAAAGCGAAAGTCCCTCTCAAATCAAATTTATGGACATCATCTCCAAGAAGCACCCGGTTGACACGTTGTTCTTCATCGCCACCGTGAAAACCAGCATCAACTCGGAGTTCCTCAATCGCTGTCGGATGAACTCCATCAACAACTGGCAGGTGTTCTTTCCCATCCATTTCCAATACTACAATCCTGACATTGCTTATCATAACCAGCCTCTTCCCAATACATTGGATTTGGTCAAAGAGGCTGGCCACTTCGATCGCAGTTCCTTCACCGAAGCATGTTTCTACAACTCGGACTACATGGCTACCCGAACGCGCATGTCTTCGGATGTCCAGGAGAACGAGGAGATCCTGGAGAACCTGGATATTTATGACATGTTTGTCAAATACTCTGGCCTCCATGTTTTCCGAGCAGTGGAGCCGGCCCTGCATCAGAAATACAGCTACCAGCCATGTAATCCTCGTCTTAGTGAAGATATCTACCAGAGGTGTGTGCAGAGCACCCTCGACAGCCTTGGATCACGCTCTCAGCTCGCCATGCTGCTGTTTGAACAGGAACAGGGCAACAGTACTTAAAAACCAAACCTTGAAGATTGAGAAATGACTAAGGGGTGATAAACTGTTTTCGTCCATTAGGCTGATGCTTTACTAGTAGGCAGCCTGTGGAGTCACAGCGCTGAACACATCACAAATGGTGTCGGTACCAAAAAAATGACTAAAAACAATTTAAGCCTACTTAAAAATAGCAGATTTTTGTGACACCAGGGGATTTATGATTTTGCTATCTTTCTCATTTGAGCAGATTGGTTTATGTTGGCTCCTAAACCAAGCAGCTGTTAGCTGTTGAAATGATCACTATCGTAACACATCTAAATCGCTGTGCCTTCAAAAATATGCTGTCCTTTTACTATACTTTTGTCCGCAGACACTTTTCCTTAAGCAGATTTGTTTAAAAGAGTTTTAATATTTATTTAACGTAACAGGGTTTTTGTAGTATGAAGGAACCGTATCCAGATTCTGTGTTCTAGCAGTCGGTTTATTATTGTTGAAATGTTTTTAAATGTCAATTCACACTCGGTACTGAATTTATTAACCCTGTAGCGCTAACTTGTTAAATCTTAGGCTGATTTTAAAGTAAAATCATTGTCTTACTGACCATTAGTGCCAAAGAAACAAATGTCAAGAAAGTTTCAAACACTACTTTGACCAAAACTTTTCAACCAGCATGGTTCCATGTATAATTTATGCTTGAATTCTGAACAGCAGAGCACAGACATTATTACAAATACTTGCATTTAAATGCATATCAATATTTGTAATACTGAAACCACCTCAAAGAGATTTGTCAGATTAAA

Function

symbol description
chpf Enables N-acetylgalactosaminyl-proteoglycan 3-beta-glucuronosyltransferase activity and glucuronosyl-N-acetylgalactosaminyl-proteoglycan 4-beta-N-acetylgalactosaminyltransferase activity. Involved in chondroitin sulfate biosynthetic process. Predicted to be located in Golgi membrane.

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000036_01250575_01252253.mRNA True 2591 mRNA 0.42 2 1249796 1252643

Neighbor

gene id symbol gene type direction distance location
CI01000036_01008391_01018664 NA coding downstream 230795 1008084 ~ 1019001 (-)
CI01000036_00988998_00991598 NA coding downstream 258063 988998 ~ 991733 (-)
CI01000036_00792090_00794146 NA coding downstream 455088 791987 ~ 794708 (-)
CI01000036_00666753_00752077 THSD7B, THSD7BA coding downstream 497719 666722 ~ 752077 (-)
CI01000036_00585386_00663579 THSD7B, THSD7BA coding downstream 586217 585386 ~ 663579 (-)
CI01000036_01265331_01269187 NA coding upstream 12081 1264724 ~ 1269211 (-)
CI01000036_01396572_01398922 FEV coding upstream 143412 1396055 ~ 1398922 (-)
CI01000036_01406109_01409167 CRYBA2B, CRYBA2, CRYBA2A coding upstream 153408 1406051 ~ 1409466 (-)
CI01000036_01417031_01422737 UMPS coding upstream 164244 1416887 ~ 1422737 (-)
CI01000036_01428324_01454913 ITGAV coding upstream 175644 1428287 ~ 1455785 (-)
G173782 NA non-coding downstream 238029 1011412 ~ 1011767 (-)
G173780 NA non-coding downstream 239079 1010457 ~ 1010717 (-)
G173768 NA non-coding downstream 303124 946171 ~ 946672 (-)
G173555 NA non-coding downstream 320430 922755 ~ 929366 (-)
G173998 NA non-coding upstream 14523 1267166 ~ 1267686 (-)
G174014 NA non-coding upstream 49292 1301935 ~ 1302312 (-)
G174025 NA non-coding upstream 69983 1322626 ~ 1322837 (-)
G174028 NA non-coding upstream 75752 1328395 ~ 1328665 (-)
G174084 NA non-coding upstream 236431 1489074 ~ 1489537 (-)
G173528 NA other downstream 289419 959421 ~ 960377 (-)
G174002 NA other upstream 22135 1274778 ~ 1275195 (-)
G174386 NA other upstream 612291 1864934 ~ 2010840 (-)
CI01000036_02022324_02026053 NA other upstream 773265 2021947 ~ 2031983 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_037668 chpfa coding NC_007120.7 CM002893.2 11245962 ~ 11263228 (-)