CI01000036_01428324_01454913 (ITGAV)


Basic Information

Item Value
gene id CI01000036_01428324_01454913
gene name ITGAV
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000036
NCBI id null
chromosome length 2115676
location 1428287 ~ 1455785 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000036_01428324_01454913.mRNA
AAAATCTATGAGGGATCCCAGGGGGATTTACAGACTGCATTCTTGGAGACTTACTTCACTGCATTTAAAGTCATGAATCACTGACAAGTCCATATATGAATAGAATATCCCCAGGCTCTGAATAGTCATTTGTAATTGTCGCAGTTATCTGCAACTTGTGGATAAAGTGTGACTCAAGGATCGTCTTACTGATAAAAAGCTGACAGCTTTTGTTCGCATCTGTTATATTTATTGCAGTTAGTGCAATGACAGATAAAAAAAAAAATTACATTACGTGAAATTTCACTCTAATTAAATGAAGCCATATGTTTGTTTATTGTTGAATTGAATACAGATAAAATTGTATTCGTACCGTTCTTAACACATGGTGGCGCAGTTTACTAGTTCTACATAAAGCAAAAGACTTTATTAAAATAATGAATCACTCTTGCATGGAATCACAAAGATTTTATGGCATTTTTTAAAAGGTTTACCAGTTCATGCCCATTTAAGTCATGCAGACGATGCCCGGTGATGAAATCTGCGCGGAAGTTTCTCGTGACGTCACCGTGGCGTTTCAGTAGGTTGGTTTATTTTCACTTCCTGTACAGTGGGACATCCCGCGGCTGCATCCGAGCTGGGCTACATCGGTGTCCGTGTCCTACTTAGACTTCCATTTTACTGGACAGACTGGAAACGGATGAGGTTTATTTCAGCGGCCCGCCTGCAATAATGTAACGGCCATTTCTGCGAAATTGTTAGTGCGAGCGTTGCGGTAATTTTGTTATTATGGAGTGCGGAATCAGTCATATGTGCTGCTGATCAAGACATCCACCCACCCACAAACAGCGCGATCTCTCCATCTACTCTCATACTCTACAAAGACACAAAACATGGGCAAACGTCTTATCTGTTGTTGGCTTTGGGCTCTAGTGGCTCTTTTTTACTGCAAACGAGCACTTTCATTTAATCTGGACTTTAGTAAACCTACAGTTTTCTCTGGACCTCCAGGAAGTTACTTTGGATTTTCTGTGGCTTTCTTCAATCCTGATAACAAACAGGCAAACACATCTGATCAAACCCCCTCTGTAGTCACTGAGAGGGGCGCTGTCTTCAGCTGTCCTTGGCACAAGAGCGGCACATGCACACAGATTGAGTTTGACAGCACTGATGACAGGAAGAATTCCAATGGAAAGCAAATGGAGTTTAAGTCGAATCAGTGGTTTGGGGCCACTGTGCGTTCCTCTGGGGACCATATTCTGGCATGTGCTCCTCTCTACCAGTGGAGCACGTATGGATTCTCAGAAAGAGAGCCTGTCGGGACATGTTACCTGAAGAAAGGCAATAACATTGTGGAATATTCGCCCTGCCGCTCTAACTCGAACTCACCTGAGGGACAAGGATTTTGTCAAGCAGGTTTCAGTGCTGACTTTGTGAAGAAAAACCGGGTTGTTATTGGAGGACCAGGAAGCTTTTATTGGCAAGGTCAGCTGATCTCAGATGACATCACTGAGGTCATCAGCAGATACAATAAGGACTTTTTTACTCCTTACAGTAACCAGTTATCAACCAAGTCAGCCGGGGCTCAGTATGATGACAGTTATTTGGGTTACTCTGTGGCTGTTGGTGATTTTAATGATGACGGTGAAGATGATTATGTCACAGGAGTTCCCAGAGGGGAAAAGGCTCTCGGTTATGTCAACATTTTCAATGGGAAGAACATGGAGTCTATGTATAATTTCACAGGCACACAGATGGCTGCTTACTTCGGTCATTCTGTAGCAGCCGTTGACATCAATAATGACAGGAAGTTGGATTTGTTGGTGGGGGCTCCTCTGTTCATGGACCGTGGCTCAGATGGGAAACTGAGGGAGGTGGGTCAGGTCTATGTCTACCTAGGAAAAGGTGGCTTCACCTTCAACAGTGCCATCAAACTCACGGGCTCTGAGATCTATGCTCGGTATGGAAGCTCAATCTGCAGTGTGGGAGACCTCAACATGGACGGATATAATGATGTGGCTATTGCTGCCCCATATGGTGGGCAGTTCCACCGCGGCCTGGTATACATCCATAACGGGCGTCCCACAGGGCCGAGTCCTGTGGCCTCTCAAGTTCTAGAAGGAACATGGGCGTCTGCTTCCATGCCTTCAAGCTTTGGTTACGCCATGCACGGAGGCACAGATGTTGATCAGAACGGATACCCTGACCTGATTGTTGGAGTGTTTGGAGCTGACAAAGCCGTTCTGTACAGGGCTCGTCCCGTCATCAGTGTGAATGCCACACTGGATATCAGCCCACAGATTTTGAACCCTGAAGACAAAAGCTGCACCCTGTCAGGAACAACCACCACAGTTTCCTGCTTCACTGTGAAATACTGTCTAAAAGCAAATGGCAAGGGAGCGCCGTCTTCCCTTCATTTCCAAGTGGATCTGACCCTGGACCGCCTTAAACACAAGGGAGCCATCAAACGGGTGCTGTTCCTCCACAACAAGATGTCTCATTATTCAAAGAACATGACCGTCTCCAACAGCCAGGCACCAGCCTGCGAAGAACTTCAGGCTTATTTAATAGATGACTCAGAATTCAGGGATAAGATCACACCCATCTCTGTTTTTATGGAGTACAGCCTGGATTACAAAACAGCAGCCGATAAGACCGGCCTGTTGCCCATCCTTGACCAATCTACACCTACAAATGTCACCAAGCAGGCCCACATACTCCTGGATTGTGGCGAAGACAATATTTGCAAGCCAGACTTAAAACTGTCTGTTGTGAGTGACCAGAAAGAGATCTACATAGGTGACGATAACCCCCTGACCCTAGAGGTCACAGCAGAGAATGGAGGAGAGGGTGCTTATGAGGCCGACCTTATTGTCACTCTACCATCTCAGGCAGATTTCATTGGGGTCGTGCGTAACAGTGAGACATTGTCTAGACTGTCCTGTGCGTTCAAGAAAGAGAATCAGACCAGAGTGGTGGTGTGTGATCTTGGGAACCCAATGAAAGGAGGAACTAAGATAATAGCAGGCTTGCGCTTCAGTGTGCACCAGCTCTCCGAACAGGACACAGAAGTCAAGTTTGACTTGCAGATACAGAGCTCAAATCAGTTCAATAAAACCAGCAATCTGGTCTCTGTTGTCACAAAGCTTGCTGTGCTGACCAAAGTGGAATTAAGAGGGGTGTCTGCACCAGAGCAGGTGTTTTTACCCATCGCTAACTGGCAGCCAAAAGACAAGCCTGTTCTGGAGGATGACATTGGACCTCTTGTACAGCACATCTATGAGCTAAGGAACAGAGGACCCAGTACATTCAGTAAGGGCATTTTGGATGTGCAGTGGCCCTACAGATTCAACAACGGCTCTCTGCTCTACATCACCAAGTTTGAAGTGGACGGAAACATGAATTGCAGCTCAAACAGGGAGCTCAACCCTCTTAATGTCACTAATCCCAAAATAACTGACAAAAATGAGACCTCTGCCAGTGGAGCAGAGGGGAGGAACAGACACAATGTCCATCGCAGAGACCTGGAGGAAAAACAAGGGGAAGAAAACCTGGAGATTGTGGATTGTGGGAATGCAGGGTGTCAGGAGATTAAGTGTTGGGTTGGGCGTCTGGAGAAAGGCCAGAGTGCTATTCTATTTATTTACTACAGACTCGCCGTGAACACATTTCTCAAGACTGAAAGTCAAAACAAATCATACAATGTTCGATCCGCAGCCTCCTTCAATGTCATAGAGACGCCATATAAAAATTTGCATTCTGAGGTCCCAACCAGCTCAGCGTCGGCTTCTCTGAAGGTGATCTGGAACTCAGAGACCCCTCCACCTGTCCCAGGATGGGTGGTGGCTCTGGCTGTCCTGGCTGGACTGCTGCTGCTGGCTCTTCTCATCTTTGTCATGTATAAGCTGGGCTTCTTTAAACGTGTGCGGCCGCCACATGACGATAGTATTGAAAAAGAGCAGCTTCAGCCTCAGGAGAACGGAGACACAAACACAGAAGCCTGAGATCTTCACCAGTCTCTCACAGTGCTAACACAATAAT

Function

symbol description
itgav Acts upstream of or within several processes, including Kupffer's vesicle development; axis elongation involved in somitogenesis; and endothelial cell proliferation. Part of integrin complex. Is expressed in several structures, including axis; diencephalon; head; pleuroperitoneal region; and post-vent vasculature. Human ortholog(s) of this gene implicated in abdominal aortic aneurysm and acute myeloid leukemia. Orthologous to human ITGAV (integrin subunit alpha V).

GO:

id name namespace
GO:0016477 cell migration biological_process

KEGG:

id description
K06487 ITGAV, CD51; integrin alpha V

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000036_01428324_01454913.mRNA True 4020 mRNA 0.46 30 1428287 1455785

Neighbor

gene id symbol gene type direction distance location
CI01000036_01417031_01422737 UMPS coding downstream 5550 1416887 ~ 1422737 (-)
CI01000036_01406109_01409167 CRYBA2B, CRYBA2, CRYBA2A coding downstream 18821 1406051 ~ 1409466 (-)
CI01000036_01396572_01398922 FEV coding downstream 29365 1396055 ~ 1398922 (-)
CI01000036_01265331_01269187 NA coding downstream 159076 1264724 ~ 1269211 (-)
CI01000036_01250575_01252253 CHPF coding downstream 175644 1249796 ~ 1252643 (-)
CI01000036_01466321_01474630 NA coding upstream 9694 1465479 ~ 1474630 (-)
CI01000036_01475403_01476425 NA coding upstream 19618 1475403 ~ 1476691 (-)
CI01000036_01611248_01620780 ZNF804A coding upstream 155334 1611119 ~ 1621389 (-)
CI01000036_01763171_01765280 NA coding upstream 306690 1762475 ~ 1765385 (-)
CI01000036_01782319_01786637 NUP35 coding upstream 326176 1781961 ~ 1786637 (-)
G174028 NA non-coding downstream 99622 1328395 ~ 1328665 (-)
G174025 NA non-coding downstream 105450 1322626 ~ 1322837 (-)
G174014 NA non-coding downstream 125975 1301935 ~ 1302312 (-)
G173998 NA non-coding downstream 160601 1267166 ~ 1267686 (-)
G173782 NA non-coding downstream 416520 1011412 ~ 1011767 (-)
G174084 NA non-coding upstream 33289 1489074 ~ 1489537 (-)
G174090 NA non-coding upstream 41034 1496819 ~ 1497055 (-)
G174092 NA non-coding upstream 47506 1503291 ~ 1503644 (-)
G174100 NA non-coding upstream 60123 1515908 ~ 1516157 (-)
G174102 NA non-coding upstream 61266 1517051 ~ 1517420 (-)
G174002 NA other downstream 153092 1274778 ~ 1275195 (-)
G173528 NA other downstream 467910 959421 ~ 960377 (-)
G174386 NA other upstream 409149 1864934 ~ 2010840 (-)
CI01000036_02022324_02026053 NA other upstream 570123 2021947 ~ 2031983 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location