Gene
RNA
| Item | Value |
|---|---|
| gene id | G174090 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000036 |
| NCBI id | null |
| chromosome length | 2115676 |
| location | 1496819 ~ 1497055 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU197727 | True | 237 | lncRNA | 0.32 | 1 | 1496819 | 1497055 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000036_01475403_01476425 | NA | coding | downstream | 20128 | 1475403 ~ 1476691 (-) |
| CI01000036_01466321_01474630 | NA | coding | downstream | 22189 | 1465479 ~ 1474630 (-) |
| CI01000036_01428324_01454913 | ITGAV | coding | downstream | 41034 | 1428287 ~ 1455785 (-) |
| CI01000036_01417031_01422737 | UMPS | coding | downstream | 74082 | 1416887 ~ 1422737 (-) |
| CI01000036_01406109_01409167 | CRYBA2B, CRYBA2, CRYBA2A | coding | downstream | 87353 | 1406051 ~ 1409466 (-) |
| CI01000036_01611248_01620780 | ZNF804A | coding | upstream | 114064 | 1611119 ~ 1621389 (-) |
| CI01000036_01763171_01765280 | NA | coding | upstream | 265420 | 1762475 ~ 1765385 (-) |
| CI01000036_01782319_01786637 | NUP35 | coding | upstream | 284906 | 1781961 ~ 1786637 (-) |
| CI01000036_01839255_01848818 | CUNH3ORF70 | coding | upstream | 340094 | 1837149 ~ 1848818 (-) |
| CI01000036_01850532_01860056 | EHHADH | coding | upstream | 353406 | 1850461 ~ 1860056 (-) |
| G174084 | NA | non-coding | downstream | 7282 | 1489074 ~ 1489537 (-) |
| G174028 | NA | non-coding | downstream | 168154 | 1328395 ~ 1328665 (-) |
| G174025 | NA | non-coding | downstream | 173982 | 1322626 ~ 1322837 (-) |
| G174014 | NA | non-coding | downstream | 194507 | 1301935 ~ 1302312 (-) |
| G173998 | NA | non-coding | downstream | 229133 | 1267166 ~ 1267686 (-) |
| G174092 | NA | non-coding | upstream | 6236 | 1503291 ~ 1503644 (-) |
| G174100 | NA | non-coding | upstream | 18853 | 1515908 ~ 1516157 (-) |
| G174102 | NA | non-coding | upstream | 19996 | 1517051 ~ 1517420 (-) |
| G174121 | NA | non-coding | upstream | 58287 | 1555342 ~ 1555619 (-) |
| G174357 | NA | non-coding | upstream | 105476 | 1602531 ~ 1602885 (-) |
| G174002 | NA | other | downstream | 221624 | 1274778 ~ 1275195 (-) |
| G173528 | NA | other | downstream | 536442 | 959421 ~ 960377 (-) |
| G174386 | NA | other | upstream | 367879 | 1864934 ~ 2010840 (-) |
| CI01000036_02022324_02026053 | NA | other | upstream | 528853 | 2021947 ~ 2031983 (-) |
