G174002


Basic Information

Item Value
gene id G174002
gene name NA
gene type unknown
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000036
NCBI id null
chromosome length 2115676
location 1274778 ~ 1275195 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU197623
CGGGGCCAGAGTTCATGCCCTCAGAGAGACGTCGCTGACCCATAATCGAGACAAAGATTGATTAATTTAGGTGCAGAACCTGGGAGAGTGGATTCTTTTGCTACGTCAGGACAAATGCTCACCTTGCTGGAGGATTTTGCCAAAGTACTTGTTCTGGCTGGTACAGTTCCAGCGCCGAAAGCGGAACTGGTATTGGCATTCCCGCACGCCCAGCTTGGCGCCCTTGGCTACTTCGTTGACGATCTCCGGCTGGGTCTGGCAGAGCTCGGCCTGCTTGCCCGCCAGACGTTTGGTCTTCCTGCAGATGCTGTTCGGGTCCATGACCAAGGGACTCCCCACTGCCCTGAAACCAACAAAGCTTCATCAGATGACTCATCTGAACTACATAAGGTTTCACAAGATAAAGTGCGGTTATCTT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU197623 True 418 TUCP 0.53 1 1274778 1275195

Neighbor

gene id symbol gene type direction distance location
CI01000036_01265331_01269187 NA coding downstream 5567 1264724 ~ 1269211 (-)
CI01000036_01250575_01252253 CHPF coding downstream 22135 1249796 ~ 1252643 (-)
CI01000036_01008391_01018664 NA coding downstream 255777 1008084 ~ 1019001 (-)
CI01000036_00988998_00991598 NA coding downstream 283045 988998 ~ 991733 (-)
CI01000036_00792090_00794146 NA coding downstream 480070 791987 ~ 794708 (-)
CI01000036_01396572_01398922 FEV coding upstream 120860 1396055 ~ 1398922 (-)
CI01000036_01406109_01409167 CRYBA2B, CRYBA2, CRYBA2A coding upstream 130856 1406051 ~ 1409466 (-)
CI01000036_01417031_01422737 UMPS coding upstream 141692 1416887 ~ 1422737 (-)
CI01000036_01428324_01454913 ITGAV coding upstream 153092 1428287 ~ 1455785 (-)
CI01000036_01466321_01474630 NA coding upstream 190284 1465479 ~ 1474630 (-)
G173998 NA non-coding downstream 7092 1267166 ~ 1267686 (-)
G173782 NA non-coding downstream 263011 1011412 ~ 1011767 (-)
G173780 NA non-coding downstream 264061 1010457 ~ 1010717 (-)
G173768 NA non-coding downstream 328106 946171 ~ 946672 (-)
G174014 NA non-coding upstream 26740 1301935 ~ 1302312 (-)
G174025 NA non-coding upstream 47431 1322626 ~ 1322837 (-)
G174028 NA non-coding upstream 53200 1328395 ~ 1328665 (-)
G174084 NA non-coding upstream 213879 1489074 ~ 1489537 (-)
G174090 NA non-coding upstream 221624 1496819 ~ 1497055 (-)
G173528 NA other downstream 314401 959421 ~ 960377 (-)
G174386 NA other upstream 589739 1864934 ~ 2010840 (-)
CI01000036_02022324_02026053 NA other upstream 750713 2021947 ~ 2031983 (-)

Expression


Co-expression Network